RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 LINC01590Q5TEZ4 76 aa13.61□□□□□ -0.23
LIME1-209ENST00000494776 SHFQ7M4L6 423 aa13.61□□□□□ -0.23
LIME1-209ENST00000494776 ZNF786Q8N393 782 aa13.61□□□□□ -0.23
LIME1-209ENST00000494776 GTF3AQ92664 365 aaKnown RBP13.61□□□□□ -0.23
LIME1-209ENST00000494776 RDH5Q92781 318 aa13.61□□□□□ -0.23
LIME1-209ENST00000494776 ZMYND19Q96E35 227 aaPredicted RBP13.61□□□□□ -0.23
LIME1-209ENST00000494776 PKP2Q99959 881 aa13.61□□□□□ -0.23
LIME1-209ENST00000494776 PNRC2Q9NPJ4 139 aaKnown RBP13.61□□□□□ -0.23
LIME1-209ENST00000494776 CGGBP1Q9UFW8 167 aaPredicted RBP13.61□□□□□ -0.23
LIME1-209ENST00000494776 FLNAP21333 2647 aaKnown RBP13.6□□□□□ -0.23
LIME1-209ENST00000494776 M0R135 149 aa13.6□□□□□ -0.23
LIME1-209ENST00000494776 PRODHO43272 600 aa13.6□□□□□ -0.23
LIME1-209ENST00000494776 HEXAP06865 529 aa13.6□□□□□ -0.23
LIME1-209ENST00000494776 ACSM4P0C7M7 580 aa13.6□□□□□ -0.23
LIME1-209ENST00000494776 USF1P22415 310 aaPredicted RBP13.6□□□□□ -0.23
LIME1-209ENST00000494776 NR4A2P43354 598 aa13.6□□□□□ -0.23
LIME1-209ENST00000494776 MALLQ13021 153 aa13.6□□□□□ -0.23
LIME1-209ENST00000494776 HLXQ14774 488 aaPredicted RBP13.6□□□□□ -0.23
LIME1-209ENST00000494776 PCK2Q16822 640 aa13.6□□□□□ -0.23
LIME1-209ENST00000494776 SLC35D3Q5M8T2 416 aa13.6□□□□□ -0.23
LIME1-209ENST00000494776 SPATC1Q76KD6 591 aa13.6□□□□□ -0.23
LIME1-209ENST00000494776 DPY19L4Q7Z388 723 aa13.6□□□□□ -0.23
LIME1-209ENST00000494776 HAVCR1Q96D42 359 aa13.6□□□□□ -0.23
LIME1-209ENST00000494776 SLAMF6Q96DU3 332 aa13.6□□□□□ -0.23
LIME1-209ENST00000494776 ZNF799Q96GE5 643 aa13.6□□□□□ -0.23
LIME1-209ENST00000494776 CIB1Q99828 191 aa13.6□□□□□ -0.23
LIME1-209ENST00000494776 RBM4BQ9BQ04 359 aaKnown RBP13.6□□□□□ -0.23
LIME1-209ENST00000494776 RIBC2Q9H4K1 309 aa13.6□□□□□ -0.23
LIME1-209ENST00000494776 H2AFY2Q9P0M6 372 aaPredicted RBP13.6□□□□□ -0.23
LIME1-209ENST00000494776 PURGQ9UJV8 347 aaKnown RBP13.6□□□□□ -0.23
LIME1-209ENST00000494776 ORC6Q9Y5N6 252 aa13.6□□□□□ -0.23
LIME1-209ENST00000494776 RTTNQ86VV8 2226 aa13.59□□□□□ -0.23
LIME1-209ENST00000494776 ZNF469Q96JG9 3925 aaPredicted RBP13.59□□□□□ -0.23
LIME1-209ENST00000494776 ZNF878C9JN71 531 aa13.59□□□□□ -0.23
LIME1-209ENST00000494776 H3BNX3 289 aa13.59□□□□□ -0.23
LIME1-209ENST00000494776 NCR1O76036 304 aa13.59□□□□□ -0.23
LIME1-209ENST00000494776 PSKH1P11801 424 aa13.59□□□□□ -0.23
LIME1-209ENST00000494776 RAC2P15153 192 aa13.59□□□□□ -0.23
LIME1-209ENST00000494776 COL8A2P25067 703 aa13.59□□□□□ -0.23
LIME1-209ENST00000494776 SLC15A1P46059 708 aa13.59□□□□□ -0.23
LIME1-209ENST00000494776 MMP15P51511 669 aa13.59□□□□□ -0.23
LIME1-209ENST00000494776 LOXL1Q08397 574 aaPredicted RBP13.59□□□□□ -0.23
LIME1-209ENST00000494776 APOFQ13790 326 aa13.59□□□□□ -0.23
LIME1-209ENST00000494776 RSPO1Q2MKA7 263 aaPredicted RBP13.59□□□□□ -0.23
LIME1-209ENST00000494776 KRTAP27-1Q3LI81 207 aa13.59□□□□□ -0.23
LIME1-209ENST00000494776 TMEM255AQ5JRV8 349 aa13.59□□□□□ -0.23
LIME1-209ENST00000494776 NAA40Q86UY6 237 aa13.59□□□□□ -0.23
LIME1-209ENST00000494776 OR5AS1Q8N127 324 aa13.59□□□□□ -0.23
LIME1-209ENST00000494776 BBS1Q8NFJ9 593 aa13.59□□□□□ -0.23
LIME1-209ENST00000494776 OR10S1Q8NGN2 331 aa13.59□□□□□ -0.23
LIME1-209ENST00000494776 DIRC2Q96SL1 478 aa13.59□□□□□ -0.23
LIME1-209ENST00000494776 OSBPL10Q9BXB5 764 aa13.59□□□□□ -0.23
LIME1-209ENST00000494776 C1QTNF5Q9BXJ0 243 aa13.59□□□□□ -0.23
LIME1-209ENST00000494776 BPESC1Q9GZL8 116 aa13.59□□□□□ -0.23
LIME1-209ENST00000494776 EGLN1Q9GZT9 426 aa13.59□□□□□ -0.23
LIME1-209ENST00000494776 SAP30LQ9HAJ7 183 aa13.59□□□□□ -0.23
LIME1-209ENST00000494776 MSL2Q9HCI7 577 aa13.59□□□□□ -0.23
LIME1-209ENST00000494776 DDX28Q9NUL7 540 aaKnown RBP13.59□□□□□ -0.23
LIME1-209ENST00000494776 NKIRAS2Q9NYR9 191 aa13.59□□□□□ -0.23
LIME1-209ENST00000494776 ZDHHC8Q9ULC8 765 aa13.59□□□□□ -0.23
LIME1-209ENST00000494776 N6AMT1Q9Y5N5 214 aa13.59□□□□□ -0.23
LIME1-209ENST00000494776 ZSCAN5BA6NJL1 495 aa13.58□□□□□ -0.24
LIME1-209ENST00000494776 ZAR1LA6NP61 321 aa13.58□□□□□ -0.24
LIME1-209ENST00000494776 VWC2LB2RUY7 222 aa13.58□□□□□ -0.24
LIME1-209ENST00000494776 TLX2O43763 284 aaPredicted RBP13.58□□□□□ -0.24
LIME1-209ENST00000494776 SELENOFO60613 162 aa13.58□□□□□ -0.24
LIME1-209ENST00000494776 CDC14BO60729 498 aa13.58□□□□□ -0.24
LIME1-209ENST00000494776 IGHV1-46P01743 117 aa13.58□□□□□ -0.24
LIME1-209ENST00000494776 KITLGP21583 273 aa13.58□□□□□ -0.24
LIME1-209ENST00000494776 ACHEP22303 614 aa13.58□□□□□ -0.24
LIME1-209ENST00000494776 TNFSF4P23510 183 aa13.58□□□□□ -0.24
LIME1-209ENST00000494776 HSD11B1P28845 292 aa13.58□□□□□ -0.24
LIME1-209ENST00000494776 PRKXP51817 358 aa13.58□□□□□ -0.24
LIME1-209ENST00000494776 GRB2P62993 217 aaKnown RBP13.58□□□□□ -0.24
LIME1-209ENST00000494776 FAM209AQ5JX71 171 aa13.58□□□□□ -0.24
LIME1-209ENST00000494776 LCN1P1Q5VSP4 162 aa13.58□□□□□ -0.24
LIME1-209ENST00000494776 SLX4IPQ5VYV7 408 aa13.58□□□□□ -0.24
LIME1-209ENST00000494776 DRAM2Q6UX65 266 aa13.58□□□□□ -0.24
LIME1-209ENST00000494776 FBXW12Q6X9E4 464 aa13.58□□□□□ -0.24
LIME1-209ENST00000494776 TIGD4Q8IY51 512 aa13.58□□□□□ -0.24
LIME1-209ENST00000494776 ZNF283Q8N7M2 679 aa13.58□□□□□ -0.24
LIME1-209ENST00000494776 ST7LQ8TDW4 575 aa13.58□□□□□ -0.24
LIME1-209ENST00000494776 THEM6Q8WUY1 208 aa13.58□□□□□ -0.24
LIME1-209ENST00000494776 KCNJ15Q99712 375 aa13.58□□□□□ -0.24
LIME1-209ENST00000494776 ABHD6Q9BV23 337 aa13.58□□□□□ -0.24
LIME1-209ENST00000494776 MARCH7Q9H992 704 aa13.58□□□□□ -0.24
LIME1-209ENST00000494776 CHODLQ9H9P2 273 aa13.58□□□□□ -0.24
LIME1-209ENST00000494776 S100A14Q9HCY8 104 aa13.58□□□□□ -0.24
LIME1-209ENST00000494776 TMEFF2Q9UIK5 374 aaPredicted RBP13.58□□□□□ -0.24
LIME1-209ENST00000494776 IGHV1-69-2A0A0G2JMI3 117 aa13.57□□□□□ -0.24
LIME1-209ENST00000494776 PRKYO43930 277 aa13.57□□□□□ -0.24
LIME1-209ENST00000494776 SELEP16581 610 aa13.57□□□□□ -0.24
LIME1-209ENST00000494776 GIFP27352 417 aa13.57□□□□□ -0.24
LIME1-209ENST00000494776 EPHA2P29317 976 aa13.57□□□□□ -0.24
LIME1-209ENST00000494776 NAA10P41227 235 aaPredicted RBP13.57□□□□□ -0.24
LIME1-209ENST00000494776 GPR6P46095 362 aaPredicted RBP13.57□□□□□ -0.24
LIME1-209ENST00000494776 MRPS11P82912 194 aaKnown RBP13.57□□□□□ -0.24
LIME1-209ENST00000494776 PPP2R2BQ00005 443 aa13.57□□□□□ -0.24
LIME1-209ENST00000494776 OR2T2Q6IF00 324 aa13.57□□□□□ -0.24
LIME1-209ENST00000494776 COLCA1Q6ZS62 124 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms