RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 SMARCD3Q6STE5 483 aa1.78□□□□□ -2.12
PTPN4-212ENST00000488896 RUFY3Q7L099 469 aa1.78□□□□□ -2.12
PTPN4-212ENST00000488896 UBE2J2Q8N2K1 259 aa1.78□□□□□ -2.12
PTPN4-212ENST00000488896 OR13C2Q8NGS9 318 aa1.78□□□□□ -2.12
PTPN4-212ENST00000488896 HGDQ93099 445 aa1.78□□□□□ -2.12
PTPN4-212ENST00000488896 NEK6Q9HC98 313 aa1.78□□□□□ -2.12
PTPN4-212ENST00000488896 CSDC2Q9Y534 153 aaKnown RBP1.78□□□□□ -2.12
PTPN4-212ENST00000488896 PALLDQ8WX93 1383 aa1.77□□□□□ -2.13
PTPN4-212ENST00000488896 TSPAN13O95857 204 aa1.77□□□□□ -2.13
PTPN4-212ENST00000488896 PAHP00439 452 aa1.77□□□□□ -2.13
PTPN4-212ENST00000488896 MCF2P10911 925 aa1.77□□□□□ -2.13
PTPN4-212ENST00000488896 SYNJ2BPP57105 145 aa1.77□□□□□ -2.13
PTPN4-212ENST00000488896 RBMY1FQ15415 496 aaKnown RBP1.77□□□□□ -2.13
PTPN4-212ENST00000488896 OR7A5Q15622 319 aa1.77□□□□□ -2.13
PTPN4-212ENST00000488896 PGGHGQ32M88 737 aa1.77□□□□□ -2.13
PTPN4-212ENST00000488896 KRTAP13-4Q3LI77 160 aa1.77□□□□□ -2.13
PTPN4-212ENST00000488896 GPR107Q5VW38 600 aa1.77□□□□□ -2.13
PTPN4-212ENST00000488896 RNASEKQ6P5S7 137 aaKnown RBP1.77□□□□□ -2.13
PTPN4-212ENST00000488896 CSGALNACT2Q8N6G5 542 aa1.77□□□□□ -2.13
PTPN4-212ENST00000488896 B3GNT7Q8NFL0 401 aa1.77□□□□□ -2.13
PTPN4-212ENST00000488896 OR2A1Q8NGT9 310 aa1.77□□□□□ -2.13
PTPN4-212ENST00000488896 FBXO32Q969P5 355 aa1.77□□□□□ -2.13
PTPN4-212ENST00000488896 DUS3LQ96G46 650 aaKnown RBP1.77□□□□□ -2.13
PTPN4-212ENST00000488896 LZTS2Q9BRK4 669 aa1.77□□□□□ -2.13
PTPN4-212ENST00000488896 FGF20Q9NP95 211 aaPredicted RBP1.77□□□□□ -2.13
PTPN4-212ENST00000488896 RHBDL2Q9NX52 303 aa1.77□□□□□ -2.13
PTPN4-212ENST00000488896 NUP50Q9UKX7 468 aa1.77□□□□□ -2.13
PTPN4-212ENST00000488896 STARD10Q9Y365 291 aa1.77□□□□□ -2.13
PTPN4-212ENST00000488896 IGHV3-72A0A0B4J1Y9 119 aa1.76□□□□□ -2.13
PTPN4-212ENST00000488896 IGKV1-8A0A0C4DH67 115 aa1.76□□□□□ -2.13
PTPN4-212ENST00000488896 LRRIQ3A6PVS8 624 aaPredicted RBP1.76□□□□□ -2.13
PTPN4-212ENST00000488896 H7C417 338 aa1.76□□□□□ -2.13
PTPN4-212ENST00000488896 MFNGO00587 321 aa1.76□□□□□ -2.13
PTPN4-212ENST00000488896 CDC40O60508 579 aaKnown RBP eCLIP1.76□□□□□ -2.13
PTPN4-212ENST00000488896 SERPINA5P05154 406 aa1.76□□□□□ -2.13
PTPN4-212ENST00000488896 SLC2A3P11169 496 aa1.76□□□□□ -2.13
PTPN4-212ENST00000488896 CD99P14209 185 aa1.76□□□□□ -2.13
PTPN4-212ENST00000488896 NSG1P42857 185 aa1.76□□□□□ -2.13
PTPN4-212ENST00000488896 IDH2P48735 452 aaKnown RBP1.76□□□□□ -2.13
PTPN4-212ENST00000488896 GFERP55789 205 aa1.76□□□□□ -2.13
PTPN4-212ENST00000488896 CYP24A1Q07973 514 aa1.76□□□□□ -2.13
PTPN4-212ENST00000488896 ZNF645Q8N7E2 425 aa1.76□□□□□ -2.13
PTPN4-212ENST00000488896 OR11H7Q8NGC8 314 aa1.76□□□□□ -2.13
PTPN4-212ENST00000488896 OR9K2Q8NGE7 335 aa1.76□□□□□ -2.13
PTPN4-212ENST00000488896 DCPSQ96C86 337 aaKnown RBP1.76□□□□□ -2.13
PTPN4-212ENST00000488896 CCDC126Q96EE4 140 aa1.76□□□□□ -2.13
PTPN4-212ENST00000488896 ATP5SQ99766 215 aa1.76□□□□□ -2.13
PTPN4-212ENST00000488896 SEC22CQ9BRL7 303 aa1.76□□□□□ -2.13
PTPN4-212ENST00000488896 PSMC3IPQ9P2W1 217 aaPredicted RBP1.76□□□□□ -2.13
PTPN4-212ENST00000488896 MTFP1Q9UDX5 166 aa1.76□□□□□ -2.13
PTPN4-212ENST00000488896 EIF4E2O60573 245 aaKnown RBP1.75□□□□□ -2.13
PTPN4-212ENST00000488896 GLSO94925 669 aaPredicted RBP1.75□□□□□ -2.13
PTPN4-212ENST00000488896 LHBP01229 141 aa1.75□□□□□ -2.13
PTPN4-212ENST00000488896 PFN1P07737 140 aaKnown RBP1.75□□□□□ -2.13
PTPN4-212ENST00000488896 CHMLP26374 656 aa1.75□□□□□ -2.13
PTPN4-212ENST00000488896 TGFBR2P37173 567 aa1.75□□□□□ -2.13
PTPN4-212ENST00000488896 ACTR3P61158 418 aa1.75□□□□□ -2.13
PTPN4-212ENST00000488896 MAD2L1BPQ15013 274 aaPredicted RBP1.75□□□□□ -2.13
PTPN4-212ENST00000488896 VPS26BQ4G0F5 336 aa1.75□□□□□ -2.13
PTPN4-212ENST00000488896 CEP55Q53EZ4 464 aa1.75□□□□□ -2.13
PTPN4-212ENST00000488896 KLHL12Q53G59 568 aa1.75□□□□□ -2.13
PTPN4-212ENST00000488896 MED27Q6P2C8 311 aa1.75□□□□□ -2.13
PTPN4-212ENST00000488896 TMEM107Q6UX40 140 aa1.75□□□□□ -2.13
PTPN4-212ENST00000488896 NECAB1Q8N987 351 aa1.75□□□□□ -2.13
PTPN4-212ENST00000488896 SPATA4Q8NEY3 305 aa1.75□□□□□ -2.13
PTPN4-212ENST00000488896 KCNG3Q8TAE7 436 aa1.75□□□□□ -2.13
PTPN4-212ENST00000488896 GPR151Q8TDV0 419 aa1.75□□□□□ -2.13
PTPN4-212ENST00000488896 ZNF606Q8WXB4 792 aa1.75□□□□□ -2.13
PTPN4-212ENST00000488896 KIFAP3Q92845 792 aa1.75□□□□□ -2.13
PTPN4-212ENST00000488896 STACQ99469 402 aa1.75□□□□□ -2.13
PTPN4-212ENST00000488896 KLF6Q99612 283 aaPredicted RBP1.75□□□□□ -2.13
PTPN4-212ENST00000488896 MARVELD1Q9BSK0 173 aa1.75□□□□□ -2.13
PTPN4-212ENST00000488896 NEUROG2Q9H2A3 272 aa1.75□□□□□ -2.13
PTPN4-212ENST00000488896 COX16Q9P0S2 106 aa1.75□□□□□ -2.13
PTPN4-212ENST00000488896 ZSWIM8A7E2V4 1837 aa1.75□□□□□ -2.13
PTPN4-212ENST00000488896 RAB29O14966 203 aa1.74□□□□□ -2.13
PTPN4-212ENST00000488896 ASGR1P07306 291 aa1.74□□□□□ -2.13
PTPN4-212ENST00000488896 ANXA5P08758 320 aa1.74□□□□□ -2.13
PTPN4-212ENST00000488896 ACSM4P0C7M7 580 aa1.74□□□□□ -2.13
PTPN4-212ENST00000488896 UQCRFS1P1P0C7P4 283 aa1.74□□□□□ -2.13
PTPN4-212ENST00000488896 HRES1P13985 223 aa1.74□□□□□ -2.13
PTPN4-212ENST00000488896 RBM34P42696 430 aaKnown RBP1.74□□□□□ -2.13
PTPN4-212ENST00000488896 TMED10P49755 219 aaKnown RBP1.74□□□□□ -2.13
PTPN4-212ENST00000488896 RPS23P62266 143 aaKnown RBP1.74□□□□□ -2.13
PTPN4-212ENST00000488896 ADARB1P78563 741 aaKnown RBP1.74□□□□□ -2.13
PTPN4-212ENST00000488896 TNFRSF9Q07011 255 aa1.74□□□□□ -2.13
PTPN4-212ENST00000488896 CDR2LQ86X02 465 aaPredicted RBP1.74□□□□□ -2.13
PTPN4-212ENST00000488896 SLC29A1Q99808 456 aa1.74□□□□□ -2.13
PTPN4-212ENST00000488896 C1orf50Q9BV19 199 aa1.74□□□□□ -2.13
PTPN4-212ENST00000488896 SLC2A8Q9NY64 477 aa1.74□□□□□ -2.13
PTPN4-212ENST00000488896 SMIM26A0A096LP01 95 aa1.73□□□□□ -2.13
PTPN4-212ENST00000488896 J3QKU1 62 aa1.73□□□□□ -2.13
PTPN4-212ENST00000488896 PLIN3O60664 434 aa1.73□□□□□ -2.13
PTPN4-212ENST00000488896 PALMO75781 387 aa1.73□□□□□ -2.13
PTPN4-212ENST00000488896 ZNF35P13682 527 aa1.73□□□□□ -2.13
PTPN4-212ENST00000488896 TNNI1P19237 187 aa1.73□□□□□ -2.13
PTPN4-212ENST00000488896 NTF3P20783 257 aa1.73□□□□□ -2.13
PTPN4-212ENST00000488896 GALR1P47211 349 aa1.73□□□□□ -2.13
PTPN4-212ENST00000488896 ZNF726P1Q15940 193 aa1.73□□□□□ -2.13
PTPN4-212ENST00000488896 SOHLH1Q5JUK2 328 aa1.73□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms