RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 PRSS35Q8N3Z0 413 aa13.16□□□□□ -0.3
HDAC6-220ENST00000477528 CD300LFQ8TDQ1 290 aa13.16□□□□□ -0.3
HDAC6-220ENST00000477528 SGCZQ96LD1 299 aa13.16□□□□□ -0.3
HDAC6-220ENST00000477528 CNTNAP3BQ96NU0 1288 aa13.16□□□□□ -0.3
HDAC6-220ENST00000477528 AIFM2Q9BRQ8 373 aa13.16□□□□□ -0.3
HDAC6-220ENST00000477528 PPP1R3EQ9H7J1 279 aa13.16□□□□□ -0.3
HDAC6-220ENST00000477528 PCDHGA1Q9Y5H4 931 aa13.16□□□□□ -0.3
HDAC6-220ENST00000477528 KRBOX1C9JBD0 128 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 TPD52L2O43399 206 aaKnown RBP13.15□□□□□ -0.3
HDAC6-220ENST00000477528 TBPP20226 339 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 NPY4RP50391 375 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 GGTLC2Q14390 218 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 ANKRD16Q6P6B7 361 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 ZNF680Q8NEM1 530 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 ARPC5LQ9BPX5 153 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 EIF5A2Q9GZV4 153 aaKnown RBP13.15□□□□□ -0.3
HDAC6-220ENST00000477528 F8W036 122 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 GSTZ1O43708 216 aaPredicted RBP13.15□□□□□ -0.3
HDAC6-220ENST00000477528 NDUFB6O95139 128 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 EPHA8P29322 1005 aaPredicted RBP13.15□□□□□ -0.3
HDAC6-220ENST00000477528 ECI1P42126 302 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 BLOC1S1P78537 153 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 MFGE8Q08431 387 aaPredicted RBP13.15□□□□□ -0.3
HDAC6-220ENST00000477528 WDR74Q6RFH5 385 aaPredicted RBP13.15□□□□□ -0.3
HDAC6-220ENST00000477528 KCNE5Q9UJ90 142 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 A6NCN8 305 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 M0R135 149 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 MEX3BQ6ZN04 569 aaKnown RBP13.15□□□□□ -0.3
HDAC6-220ENST00000477528 NLRC3Q7RTR2 1065 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 TMEM229BQ8NBD8 167 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 NUBPLQ8TB37 319 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 ZNF799Q96GE5 643 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 AICDAQ9GZX7 198 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 DNTTIP1Q9H147 329 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 MTFP1Q9UDX5 166 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 ST6GALNAC2Q9UJ37 374 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 ZNF175Q9Y473 711 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 TEX51A0A1B0GUA7 166 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 SHISA8B8ZZ34 492 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 RGS11O94810 467 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 ITGB2P05107 769 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 OR4E1P0C645 316 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 SELENOVP59797 346 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 C1QL3Q5VWW1 255 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 PRSS42Q7Z5A4 293 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 OR10G3Q8NGC4 313 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 NUDCD2Q8WVJ2 157 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 CTHRC1Q96CG8 243 aa13.15□□□□□ -0.3
HDAC6-220ENST00000477528 ZNF814B7Z6K7 855 aa13.14□□□□□ -0.31
HDAC6-220ENST00000477528 OR8U9P0C7N5 309 aa13.14□□□□□ -0.31
HDAC6-220ENST00000477528 PTHLHP12272 177 aa13.14□□□□□ -0.31
HDAC6-220ENST00000477528 CAV2P51636 162 aa13.14□□□□□ -0.31
HDAC6-220ENST00000477528 GUCA2AQ02747 115 aa13.14□□□□□ -0.31
HDAC6-220ENST00000477528 STX12Q86Y82 276 aa13.14□□□□□ -0.31
HDAC6-220ENST00000477528 RRNAD1Q96FB5 475 aaKnown RBP13.14□□□□□ -0.31
HDAC6-220ENST00000477528 SPACA5Q96QH8 159 aa13.14□□□□□ -0.31
HDAC6-220ENST00000477528 MYOTQ9UBF9 498 aa13.14□□□□□ -0.31
HDAC6-220ENST00000477528 SEC16AO15027 2179 aa13.14□□□□□ -0.31
HDAC6-220ENST00000477528 F10P00742 488 aa13.14□□□□□ -0.31
HDAC6-220ENST00000477528 TPOP07202 933 aa13.14□□□□□ -0.31
HDAC6-220ENST00000477528 AKR1C2P52895 323 aa13.14□□□□□ -0.31
HDAC6-220ENST00000477528 DBPQ10586 325 aaPredicted RBP13.14□□□□□ -0.31
HDAC6-220ENST00000477528 GSG1Q2KHT4 349 aa13.14□□□□□ -0.31
HDAC6-220ENST00000477528 C16orf47Q6ZP98 133 aaPredicted RBP13.14□□□□□ -0.31
HDAC6-220ENST00000477528 KANSL1Q7Z3B3 1105 aa13.14□□□□□ -0.31
HDAC6-220ENST00000477528 PAQR8Q8TEZ7 354 aa13.14□□□□□ -0.31
HDAC6-220ENST00000477528 PBDC1Q9BVG4 233 aa13.14□□□□□ -0.31
HDAC6-220ENST00000477528 RGCCQ9H4X1 137 aa13.14□□□□□ -0.31
HDAC6-220ENST00000477528 PYCARD-AS1I3L0S3 204 aa13.14□□□□□ -0.31
HDAC6-220ENST00000477528 TSPAN15O95858 294 aa13.14□□□□□ -0.31
HDAC6-220ENST00000477528 TK1P04183 234 aa13.14□□□□□ -0.31
HDAC6-220ENST00000477528 ZNF121P58317 390 aaPredicted RBP13.14□□□□□ -0.31
HDAC6-220ENST00000477528 ST3GAL2Q16842 350 aa13.14□□□□□ -0.31
HDAC6-220ENST00000477528 OR4D9Q8NGE8 314 aa13.14□□□□□ -0.31
HDAC6-220ENST00000477528 OR10K1Q8NGX5 313 aa13.14□□□□□ -0.31
HDAC6-220ENST00000477528 ASB13Q8WXK3 278 aa13.14□□□□□ -0.31
HDAC6-220ENST00000477528 RBPMSQ93062 196 aaKnown RBP13.14□□□□□ -0.31
HDAC6-220ENST00000477528 INTS12Q96CB8 462 aaKnown RBP13.14□□□□□ -0.31
HDAC6-220ENST00000477528 FRRS1LQ9P0K9 344 aa13.14□□□□□ -0.31
HDAC6-220ENST00000477528 SF3B6Q9Y3B4 125 aaKnown RBP13.14□□□□□ -0.31
HDAC6-220ENST00000477528 EP400Q96L91 3159 aa13.14□□□□□ -0.31
HDAC6-220ENST00000477528 MEIKINA0A087WXM9 373 aa13.14□□□□□ -0.31
HDAC6-220ENST00000477528 ZNF587BE7ETH6 402 aa13.14□□□□□ -0.31
HDAC6-220ENST00000477528 DHHO43323 396 aa13.14□□□□□ -0.31
HDAC6-220ENST00000477528 UBE2MP61081 183 aaKnown RBP13.14□□□□□ -0.31
HDAC6-220ENST00000477528 IL11RAQ14626 422 aa13.14□□□□□ -0.31
HDAC6-220ENST00000477528 PWWP2BQ6NUJ5 590 aa13.14□□□□□ -0.31
HDAC6-220ENST00000477528 CBR3O75828 277 aa13.13□□□□□ -0.31
HDAC6-220ENST00000477528 CD1AP06126 327 aa13.13□□□□□ -0.31
HDAC6-220ENST00000477528 KCNE4Q8WWG9 221 aa13.13□□□□□ -0.31
HDAC6-220ENST00000477528 CTAG2O75638 210 aa13.13□□□□□ -0.31
HDAC6-220ENST00000477528 PCK2Q16822 640 aa13.13□□□□□ -0.31
HDAC6-220ENST00000477528 OR52H1Q8NGJ2 320 aa13.13□□□□□ -0.31
HDAC6-220ENST00000477528 OR10R2Q8NGX6 335 aa13.13□□□□□ -0.31
HDAC6-220ENST00000477528 CALHM2Q9HA72 323 aa13.13□□□□□ -0.31
HDAC6-220ENST00000477528 DSCR4P56555 118 aaPredicted RBP13.13□□□□□ -0.31
HDAC6-220ENST00000477528 RHOUQ7L0Q8 258 aa13.13□□□□□ -0.31
HDAC6-220ENST00000477528 hCG_1807616A0A1W2PRN6 198 aa13.13□□□□□ -0.31
HDAC6-220ENST00000477528 CCSO14618 274 aa13.13□□□□□ -0.31
HDAC6-220ENST00000477528 OIP5O43482 229 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms