RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 CXXC4Q9H2H0 198 aa4.08□□□□□ -1.76
CCDC88A-210ENST00000468534 TLE6Q9H808 572 aa4.08□□□□□ -1.76
CCDC88A-210ENST00000468534 ACKR4Q9NPB9 350 aa4.08□□□□□ -1.76
CCDC88A-210ENST00000468534 DUS2Q9NX74 493 aaKnown RBP4.08□□□□□ -1.76
CCDC88A-210ENST00000468534 RNF186Q9NXI6 227 aa4.08□□□□□ -1.76
CCDC88A-210ENST00000468534 GLTPQ9NZD2 209 aa4.08□□□□□ -1.76
CCDC88A-210ENST00000468534 ZNF107Q9UII5 783 aaPredicted RBP4.08□□□□□ -1.76
CCDC88A-210ENST00000468534 LSM7Q9UK45 103 aaKnown RBP4.08□□□□□ -1.76
CCDC88A-210ENST00000468534 VPREB3Q9UKI3 123 aa4.08□□□□□ -1.76
CCDC88A-210ENST00000468534 SLC7A11Q9UPY5 501 aa4.08□□□□□ -1.76
CCDC88A-210ENST00000468534 ALG5Q9Y673 324 aa4.08□□□□□ -1.76
CCDC88A-210ENST00000468534 FGD5Q6ZNL6 1462 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 SMIM28A0A1B0GU29 152 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 A0A1W2PP11 408 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 OR6C6A6NF89 314 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 LILRA5A6NI73 299 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 SEC14L6B5MCN3 397 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 C15orf65H3BRN8 121 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 TMX2-CTNND1H3BSU7 103 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 KCNK1O00180 336 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 DLEU1O43261 78 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 GPR137BO60478 399 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 ENTPD6O75354 484 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 IFNA10P01566 189 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 RAB3AP20336 220 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 C4BPBP20851 252 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 LOXP28300 417 aaPredicted RBP4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 NTSP30990 170 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 RCVRNP35243 200 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 VHLP40337 213 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 KIR2DS4P43632 304 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 PGFP49763 221 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 XGP55808 180 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 ISL1P61371 349 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 CDKL1Q00532 357 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 RELAQ04206 551 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 TEAD2Q15562 447 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 ATP6AP1Q15904 470 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 ASPRV1Q53RT3 343 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 VWA2Q5GFL6 755 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 SLC35D3Q5M8T2 416 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 RAD9BQ6WBX8 426 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 Q71RC1 249 aaPredicted RBP4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 OLIG3Q7RTU3 272 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 TSEN54Q7Z6J9 526 aaKnown RBP4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 LRTM2Q8N967 370 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 RELL2Q8NC24 303 aaPredicted RBP4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 SLC26A10Q8NG04 563 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 OR4F15Q8NGB8 312 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 OR11H4Q8NGC9 324 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 OR4D9Q8NGE8 314 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 HMGCLL1Q8TB92 370 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 CNIH3Q8TBE1 160 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 CD99L2Q8TCZ2 262 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 CD200R1Q8TD46 325 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 DCPSQ96C86 337 aaKnown RBP4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 ZHX1-C8orf76Q96EF9 292 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 MED8Q96G25 268 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 SDSLQ96GA7 329 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 PCED1BQ96HM7 432 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 ZNF488Q96MN9 340 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 TMEM208Q9BTX3 173 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 NAT10Q9H0A0 1025 aaKnown RBP4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 ARV1Q9H2C2 271 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 ARRDC1-AS1Q9H2J1 176 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 MIXL1Q9H2W2 232 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 ALG9Q9H6U8 611 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 TPT1P8Q9HAU6 139 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 WFDC1Q9HC57 220 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 S100A14Q9HCY8 104 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 MIEF1Q9NQG6 463 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 FBXO6Q9NRD1 293 aaPredicted RBP4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 AGPAT4Q9NRZ5 378 aa4.07□□□□□ -1.76
CCDC88A-210ENST00000468534 CAMSAP1Q5T5Y3 1602 aa4.06□□□□□ -1.76
CCDC88A-210ENST00000468534 TSPAN11A1L157 253 aa4.06□□□□□ -1.76
CCDC88A-210ENST00000468534 C9orf170A2RU37 121 aa4.06□□□□□ -1.76
CCDC88A-210ENST00000468534 IGLON5A6NGN9 336 aa4.06□□□□□ -1.76
CCDC88A-210ENST00000468534 ZNF878C9JN71 531 aa4.06□□□□□ -1.76
CCDC88A-210ENST00000468534 PHF1O43189 567 aaPredicted RBP4.06□□□□□ -1.76
CCDC88A-210ENST00000468534 ENSAO43768 121 aaKnown RBP4.06□□□□□ -1.76
CCDC88A-210ENST00000468534 CDC40O60508 579 aaKnown RBP eCLIP4.06□□□□□ -1.76
CCDC88A-210ENST00000468534 HAND1O96004 215 aa4.06□□□□□ -1.76
CCDC88A-210ENST00000468534 CRYAAP02489 173 aa4.06□□□□□ -1.76
CCDC88A-210ENST00000468534 CTSLP07711 333 aa4.06□□□□□ -1.76
CCDC88A-210ENST00000468534 ABOP16442 354 aa4.06□□□□□ -1.76
CCDC88A-210ENST00000468534 F2RP25116 425 aa4.06□□□□□ -1.76
CCDC88A-210ENST00000468534 FOXN2P32314 431 aa4.06□□□□□ -1.76
CCDC88A-210ENST00000468534 RPS9P46781 194 aaKnown RBP4.06□□□□□ -1.76
CCDC88A-210ENST00000468534 YAP1P46937 504 aaKnown RBP4.06□□□□□ -1.76
CCDC88A-210ENST00000468534 AQP5P55064 265 aa4.06□□□□□ -1.76
CCDC88A-210ENST00000468534 TAS2R31P59538 309 aa4.06□□□□□ -1.76
CCDC88A-210ENST00000468534 RAB2AP61019 212 aa4.06□□□□□ -1.76
CCDC88A-210ENST00000468534 RPL31P62899 125 aaKnown RBP4.06□□□□□ -1.76
CCDC88A-210ENST00000468534 IL5RAQ01344 420 aa4.06□□□□□ -1.76
CCDC88A-210ENST00000468534 KCNJ11Q14654 390 aa4.06□□□□□ -1.76
CCDC88A-210ENST00000468534 TSNQ15631 228 aaKnown RBP4.06□□□□□ -1.76
CCDC88A-210ENST00000468534 CALCRLQ16602 461 aa4.06□□□□□ -1.76
CCDC88A-210ENST00000468534 TMEM52BQ4KMG9 183 aa4.06□□□□□ -1.76
CCDC88A-210ENST00000468534 PHLDA2Q53GA4 152 aa4.06□□□□□ -1.76
CCDC88A-210ENST00000468534 SYT6Q5T7P8 510 aaPredicted RBP4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms