RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 ATG4BQ9Y4P1 393 aa17.26■□□□□ 0.35
HMGA1-205ENST00000447654 MSGN1A6NI15 193 aa17.25■□□□□ 0.35
HMGA1-205ENST00000447654 C1QTNF3-AMACRE9PGA6 284 aa17.25■□□□□ 0.35
HMGA1-205ENST00000447654 SMAD9O15198 467 aaKnown RBP17.25■□□□□ 0.35
HMGA1-205ENST00000447654 KCNAB3O43448 404 aa17.25■□□□□ 0.35
HMGA1-205ENST00000447654 F3P13726 295 aa17.25■□□□□ 0.35
HMGA1-205ENST00000447654 ST6GAL1P15907 406 aa17.25■□□□□ 0.35
HMGA1-205ENST00000447654 G0S2P27469 103 aa17.25■□□□□ 0.35
HMGA1-205ENST00000447654 P2RY2P41231 377 aa17.25■□□□□ 0.35
HMGA1-205ENST00000447654 SKP1P63208 163 aa17.25■□□□□ 0.35
HMGA1-205ENST00000447654 C2orf76Q3KRA6 126 aa17.25■□□□□ 0.35
HMGA1-205ENST00000447654 LAMP5Q9UJQ1 280 aa17.25■□□□□ 0.35
HMGA1-205ENST00000447654 TRPM6Q9BX84 2022 aa17.25■□□□□ 0.35
HMGA1-205ENST00000447654 C13orf42A0A1B0GVH6 325 aa17.25■□□□□ 0.35
HMGA1-205ENST00000447654 M0QZK8 103 aa17.25■□□□□ 0.35
HMGA1-205ENST00000447654 RAB27BO00194 218 aa17.25■□□□□ 0.35
HMGA1-205ENST00000447654 GGCTO75223 188 aaKnown RBP17.25■□□□□ 0.35
HMGA1-205ENST00000447654 FABP4P15090 132 aa17.25■□□□□ 0.35
HMGA1-205ENST00000447654 CD200P41217 278 aa17.25■□□□□ 0.35
HMGA1-205ENST00000447654 DHPSP49366 369 aaPredicted RBP17.25■□□□□ 0.35
HMGA1-205ENST00000447654 C2orf73Q8N5S3 287 aaPredicted RBP17.25■□□□□ 0.35
HMGA1-205ENST00000447654 LFNGQ8NES3 379 aa17.25■□□□□ 0.35
HMGA1-205ENST00000447654 CDS1Q92903 461 aa17.25■□□□□ 0.35
HMGA1-205ENST00000447654 C16orf58Q96GQ5 468 aa17.25■□□□□ 0.35
HMGA1-205ENST00000447654 AIF1LQ9BQI0 150 aa17.25■□□□□ 0.35
HMGA1-205ENST00000447654 EPHX3Q9H6B9 360 aa17.25■□□□□ 0.35
HMGA1-205ENST00000447654 TM7SF3Q9NS93 570 aa17.25■□□□□ 0.35
HMGA1-205ENST00000447654 NUMA1Q14980 2115 aa17.25■□□□□ 0.35
HMGA1-205ENST00000447654 M0R143 59 aa17.24■□□□□ 0.35
HMGA1-205ENST00000447654 CYTIPO60759 359 aa17.24■□□□□ 0.35
HMGA1-205ENST00000447654 SNRPCP09234 159 aaKnown RBP17.24■□□□□ 0.35
HMGA1-205ENST00000447654 ZNF25P17030 456 aaPredicted RBP17.24■□□□□ 0.35
HMGA1-205ENST00000447654 DCAF10Q5QP82 559 aa17.24■□□□□ 0.35
HMGA1-205ENST00000447654 RPL7L1Q6DKI1 246 aaKnown RBP17.24■□□□□ 0.35
HMGA1-205ENST00000447654 FAM166AQ6J272 317 aa17.24■□□□□ 0.35
HMGA1-205ENST00000447654 OPN5Q6U736 354 aa17.24■□□□□ 0.35
HMGA1-205ENST00000447654 WDR88Q6ZMY6 472 aa17.24■□□□□ 0.35
HMGA1-205ENST00000447654 ZNF836Q6ZNA1 936 aa17.24■□□□□ 0.35
HMGA1-205ENST00000447654 ERN2Q76MJ5 926 aaKnown RBP17.24■□□□□ 0.35
HMGA1-205ENST00000447654 ZNF584Q8IVC4 421 aa17.24■□□□□ 0.35
HMGA1-205ENST00000447654 OR52E2Q8NGJ4 325 aa17.24■□□□□ 0.35
HMGA1-205ENST00000447654 IL17FQ96PD4 163 aa17.24■□□□□ 0.35
HMGA1-205ENST00000447654 PDE7BQ9NP56 450 aa17.24■□□□□ 0.35
HMGA1-205ENST00000447654 CHRNA9Q9UGM1 479 aa17.24■□□□□ 0.35
HMGA1-205ENST00000447654 TCFL5Q9UL49 500 aa17.24■□□□□ 0.35
HMGA1-205ENST00000447654 PLAGL1Q9UM63 463 aa17.24■□□□□ 0.35
HMGA1-205ENST00000447654 EPOPA6NHQ4 379 aa17.23■□□□□ 0.35
HMGA1-205ENST00000447654 EREGO14944 169 aa17.23■□□□□ 0.35
HMGA1-205ENST00000447654 NDUFS4O43181 175 aa17.23■□□□□ 0.35
HMGA1-205ENST00000447654 MAS1P04201 325 aa17.23■□□□□ 0.35
HMGA1-205ENST00000447654 TBPP20226 339 aa17.23■□□□□ 0.35
HMGA1-205ENST00000447654 WASP42768 502 aa17.23■□□□□ 0.35
HMGA1-205ENST00000447654 SUCLG1P53597 346 aaKnown RBP17.23■□□□□ 0.35
HMGA1-205ENST00000447654 DUSP8Q13202 625 aa17.23■□□□□ 0.35
HMGA1-205ENST00000447654 GGNBP1Q5YKI7 109 aa17.23■□□□□ 0.35
HMGA1-205ENST00000447654 MCHR2Q969V1 340 aa17.23■□□□□ 0.35
HMGA1-205ENST00000447654 TRAV8-7A0A075B6U6 113 aa17.23■□□□□ 0.35
HMGA1-205ENST00000447654 A0A0A6YYD5 115 aa17.23■□□□□ 0.35
HMGA1-205ENST00000447654 HSPB2A8KAH6 182 aa17.23■□□□□ 0.35
HMGA1-205ENST00000447654 PHOX2AO14813 284 aa17.23■□□□□ 0.35
HMGA1-205ENST00000447654 PRICKLE3O43900 615 aaPredicted RBP17.23■□□□□ 0.35
HMGA1-205ENST00000447654 ERCC1P07992 297 aaPredicted RBP17.23■□□□□ 0.35
HMGA1-205ENST00000447654 CXCR1P25024 350 aa17.23■□□□□ 0.35
HMGA1-205ENST00000447654 DPTQ07507 201 aa17.23■□□□□ 0.35
HMGA1-205ENST00000447654 OR1Q1Q15612 314 aa17.23■□□□□ 0.35
HMGA1-205ENST00000447654 HSPB2Q16082 182 aa17.23■□□□□ 0.35
HMGA1-205ENST00000447654 LANCL3Q6ZV70 420 aa17.23■□□□□ 0.35
HMGA1-205ENST00000447654 KDM8Q8N371 416 aa17.23■□□□□ 0.35
HMGA1-205ENST00000447654 ZNF664Q8N3J9 261 aa17.23■□□□□ 0.35
HMGA1-205ENST00000447654 CD300LFQ8TDQ1 290 aa17.23■□□□□ 0.35
HMGA1-205ENST00000447654 DTD1Q8TEA8 209 aa17.23■□□□□ 0.35
HMGA1-205ENST00000447654 EIF5A2Q9GZV4 153 aaKnown RBP17.23■□□□□ 0.35
HMGA1-205ENST00000447654 IGFLR1Q9H665 355 aa17.23■□□□□ 0.35
HMGA1-205ENST00000447654 AMDHD2Q9Y303 409 aa17.23■□□□□ 0.35
HMGA1-205ENST00000447654 F5P12259 2224 aa17.23■□□□□ 0.35
HMGA1-205ENST00000447654 NUDT21O43809 227 aaKnown RBP17.22■□□□□ 0.35
HMGA1-205ENST00000447654 GCGP01275 180 aa17.22■□□□□ 0.35
HMGA1-205ENST00000447654 EDN3P14138 238 aa17.22■□□□□ 0.35
HMGA1-205ENST00000447654 RAB6AP20340 208 aa17.22■□□□□ 0.35
HMGA1-205ENST00000447654 GJA4P35212 333 aa17.22■□□□□ 0.35
HMGA1-205ENST00000447654 DRD3P35462 400 aa17.22■□□□□ 0.35
HMGA1-205ENST00000447654 ELOBQ15370 118 aa17.22■□□□□ 0.35
HMGA1-205ENST00000447654 TMEM52BQ4KMG9 183 aa17.22■□□□□ 0.35
HMGA1-205ENST00000447654 CASTOR1Q8WTX7 329 aa17.22■□□□□ 0.35
HMGA1-205ENST00000447654 BSCL2Q96G97 398 aaPredicted RBP17.22■□□□□ 0.35
HMGA1-205ENST00000447654 RCC1LQ96I51 464 aaKnown RBP17.22■□□□□ 0.35
HMGA1-205ENST00000447654 SLC41A2Q96JW4 573 aa17.22■□□□□ 0.35
HMGA1-205ENST00000447654 HIST1H2BLQ99880 126 aa17.22■□□□□ 0.35
HMGA1-205ENST00000447654 CNTNAP3Q9BZ76 1288 aa17.22■□□□□ 0.35
HMGA1-205ENST00000447654 COMMD4Q9H0A8 199 aa17.22■□□□□ 0.35
HMGA1-205ENST00000447654 SLC25A31Q9H0C2 315 aa17.22■□□□□ 0.35
HMGA1-205ENST00000447654 LUZP4Q9P127 313 aa17.22■□□□□ 0.35
HMGA1-205ENST00000447654 PITPNC1Q9UKF7 332 aa17.22■□□□□ 0.35
HMGA1-205ENST00000447654 FARSAQ9Y285 508 aaKnown RBP17.22■□□□□ 0.35
HMGA1-205ENST00000447654 NUP210LQ5VU65 1888 aa17.22■□□□□ 0.35
HMGA1-205ENST00000447654 TMEM212A6NML5 194 aa17.22■□□□□ 0.35
HMGA1-205ENST00000447654 STK17BO94768 372 aa17.22■□□□□ 0.35
HMGA1-205ENST00000447654 ISXQ2M1V0 245 aa17.22■□□□□ 0.35
HMGA1-205ENST00000447654 MIDNQ504T8 468 aa17.22■□□□□ 0.35
HMGA1-205ENST00000447654 OR2T2Q6IF00 324 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms