RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 SLC25A30Q5SVS4 291 aa10.8□□□□□ -0.68
HMGB1-206ENST00000405805 HACD4Q5VWC8 232 aa10.8□□□□□ -0.68
HMGB1-206ENST00000405805 ZNF679Q8IYX0 411 aa10.8□□□□□ -0.68
HMGB1-206ENST00000405805 PHYHIPQ92561 330 aa10.8□□□□□ -0.68
HMGB1-206ENST00000405805 KLHDC7BQ96G42 594 aa10.8□□□□□ -0.68
HMGB1-206ENST00000405805 C2orf42Q9NWW7 574 aa10.8□□□□□ -0.68
HMGB1-206ENST00000405805 BORCS7-ASMTA0A0B4J1R7 106 aa10.8□□□□□ -0.68
HMGB1-206ENST00000405805 A0A0B4J2E0 115 aa10.8□□□□□ -0.68
HMGB1-206ENST00000405805 A0A1B0GX12 115 aa10.8□□□□□ -0.68
HMGB1-206ENST00000405805 C17orf51A8MQB3 221 aa10.8□□□□□ -0.68
HMGB1-206ENST00000405805 SLC31A2O15432 143 aa10.8□□□□□ -0.68
HMGB1-206ENST00000405805 ZNF264O43296 627 aa10.8□□□□□ -0.68
HMGB1-206ENST00000405805 EIF1BO60739 113 aaKnown RBP10.8□□□□□ -0.68
HMGB1-206ENST00000405805 CNOT4O95628 575 aaKnown RBP10.8□□□□□ -0.68
HMGB1-206ENST00000405805 SULT1A3P0DMM9 295 aa10.8□□□□□ -0.68
HMGB1-206ENST00000405805 SULT1A4P0DMN0 295 aa10.8□□□□□ -0.68
HMGB1-206ENST00000405805 CXCL2P19875 107 aa10.8□□□□□ -0.68
HMGB1-206ENST00000405805 SFTPDP35247 375 aa10.8□□□□□ -0.68
HMGB1-206ENST00000405805 EIF1P41567 113 aaKnown RBP10.8□□□□□ -0.68
HMGB1-206ENST00000405805 RPS15P62841 145 aaKnown RBP10.8□□□□□ -0.68
HMGB1-206ENST00000405805 TMEM196Q5HYL7 178 aa10.8□□□□□ -0.68
HMGB1-206ENST00000405805 FAM160A2Q8N612 972 aaPredicted RBP10.8□□□□□ -0.68
HMGB1-206ENST00000405805 OR11G2Q8NGC1 345 aa10.8□□□□□ -0.68
HMGB1-206ENST00000405805 OR2AJ1Q8NGZ0 328 aa10.8□□□□□ -0.68
HMGB1-206ENST00000405805 ZNRF4Q8WWF5 429 aa10.8□□□□□ -0.68
HMGB1-206ENST00000405805 KTI12Q96EK9 354 aaPredicted RBP10.8□□□□□ -0.68
HMGB1-206ENST00000405805 ZNF75AQ96N20 296 aa10.8□□□□□ -0.68
HMGB1-206ENST00000405805 MRPS18AQ9NVS2 196 aaKnown RBP10.8□□□□□ -0.68
HMGB1-206ENST00000405805 CA14Q9ULX7 337 aa10.8□□□□□ -0.68
HMGB1-206ENST00000405805 TMEM218A2RU14 115 aa10.8□□□□□ -0.68
HMGB1-206ENST00000405805 MCRIP1C9JLW8 97 aa10.8□□□□□ -0.68
HMGB1-206ENST00000405805 SEMA4FO95754 770 aa10.8□□□□□ -0.68
HMGB1-206ENST00000405805 PTBP3O95758 552 aaKnown RBP10.8□□□□□ -0.68
HMGB1-206ENST00000405805 UBXN2BQ14CS0 331 aa10.8□□□□□ -0.68
HMGB1-206ENST00000405805 ZIC1Q15915 447 aa10.8□□□□□ -0.68
HMGB1-206ENST00000405805 DND1Q8IYX4 353 aaKnown RBP10.8□□□□□ -0.68
HMGB1-206ENST00000405805 OR5M8Q8NGP6 311 aa10.8□□□□□ -0.68
HMGB1-206ENST00000405805 UBQLN4Q9NRR5 601 aa10.8□□□□□ -0.68
HMGB1-206ENST00000405805 STEAP1Q9UHE8 339 aa10.8□□□□□ -0.68
HMGB1-206ENST00000405805 SYT7O43581 403 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 GALR3O60755 368 aaPredicted RBP10.79□□□□□ -0.68
HMGB1-206ENST00000405805 SLC35E2P0CK97 266 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 HTR2CP28335 458 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 POU3F1Q03052 451 aaPredicted RBP10.79□□□□□ -0.68
HMGB1-206ENST00000405805 RNLSQ5VYX0 342 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 WBP2NLQ6ICG8 309 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 PWWP2BQ6NUJ5 590 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 GLDNQ6ZMI3 551 aaPredicted RBP10.79□□□□□ -0.68
HMGB1-206ENST00000405805 MAMDC2Q7Z304 686 aaPredicted RBP10.79□□□□□ -0.68
HMGB1-206ENST00000405805 TRAPPC6BQ86SZ2 158 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 SLC30A7Q8NEW0 376 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 THRSPQ92748 146 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 FGGYQ96C11 551 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 SLC41A2Q96JW4 573 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 GPR137Q96N19 417 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 TAS2R5Q9NYW4 299 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 COA3Q9Y2R0 106 aaPredicted RBP10.79□□□□□ -0.68
HMGB1-206ENST00000405805 A0A1B0GUH1 482 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 TUBAL3A6NHL2 446 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 CYB5BO43169 146 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 SRPX2O60687 465 aaPredicted RBP10.79□□□□□ -0.68
HMGB1-206ENST00000405805 NGFRP08138 427 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 IL9P15248 144 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 DCAF12L2Q5VW00 463 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 C16orf47Q6ZP98 133 aaPredicted RBP10.79□□□□□ -0.68
HMGB1-206ENST00000405805 RTL10Q7L3V2 364 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 OR2W3Q7Z3T1 314 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 OR4C5Q8NGB2 326 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 EXTL1Q92935 676 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 RPH3ALQ9UNE2 315 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 FOXJ3Q9UPW0 622 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 YBX2Q9Y2T7 364 aaKnown RBP10.79□□□□□ -0.68
HMGB1-206ENST00000405805 DNAJC13O75165 2243 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 CCDC163A0A0D9SF12 145 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 C7orf66A4D0T2 115 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 SEC14L5O43304 696 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 ACAA1P09110 424 aaPredicted RBP10.79□□□□□ -0.68
HMGB1-206ENST00000405805 CHATP28329 748 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 GAS1P54826 345 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 SNU13P55769 128 aaKnown RBP10.79□□□□□ -0.68
HMGB1-206ENST00000405805 S100A7AQ86SG5 101 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 BCORP1Q8N888 145 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 OR1J2Q8NGS2 313 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 TSLPQ969D9 159 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 PGLYRP3Q96LB9 341 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 SAMD10Q9BYL1 202 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 NXF5Q9H1B4 397 aaKnown RBP10.79□□□□□ -0.68
HMGB1-206ENST00000405805 BANF2Q9H503 90 aa10.79□□□□□ -0.68
HMGB1-206ENST00000405805 TRAV1-2A0A0B4J238 106 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 TRAV34A0A0B4J273 112 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 OR5H14A6NHG9 310 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 MPZL1O95297 269 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 RIN1Q13671 783 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 KLF9Q13886 244 aaPredicted RBP10.78□□□□□ -0.68
HMGB1-206ENST00000405805 SERTAD2Q14140 314 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 TMEM225Q6GV28 225 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 CA13Q8N1Q1 262 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 NEK7Q8TDX7 302 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 PRR13Q9NZ81 148 aa10.78□□□□□ -0.68
HMGB1-206ENST00000405805 C20orf202A1L168 122 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms