RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 LIPAP38571 399 aa13.52□□□□□ -0.25
CUX2-202ENST00000397643 GPR4P46093 362 aa13.52□□□□□ -0.25
CUX2-202ENST00000397643 SLC9A3P48764 834 aa13.52□□□□□ -0.25
CUX2-202ENST00000397643 ZNF84P51523 738 aa13.52□□□□□ -0.25
CUX2-202ENST00000397643 MRPS34P82930 218 aaKnown RBP13.52□□□□□ -0.25
CUX2-202ENST00000397643 CDK5R2Q13319 367 aa13.52□□□□□ -0.25
CUX2-202ENST00000397643 ZMYND11Q15326 602 aa13.52□□□□□ -0.25
CUX2-202ENST00000397643 TAF11Q15544 211 aa13.52□□□□□ -0.25
CUX2-202ENST00000397643 ANKDD1AQ495B1 522 aa13.52□□□□□ -0.25
CUX2-202ENST00000397643 ZNF770Q6IQ21 691 aaPredicted RBP13.52□□□□□ -0.25
CUX2-202ENST00000397643 PGBD2Q6P3X8 592 aa13.52□□□□□ -0.25
CUX2-202ENST00000397643 C16orf87Q6PH81 154 aa13.52□□□□□ -0.25
CUX2-202ENST00000397643 NANOGNBQ7Z5D8 188 aa13.52□□□□□ -0.25
CUX2-202ENST00000397643 OAFQ86UD1 273 aa13.52□□□□□ -0.25
CUX2-202ENST00000397643 LRRC28Q86X40 367 aaPredicted RBP13.52□□□□□ -0.25
CUX2-202ENST00000397643 AQP11Q8NBQ7 271 aa13.52□□□□□ -0.25
CUX2-202ENST00000397643 AKR7LQ8NHP1 331 aa13.52□□□□□ -0.25
CUX2-202ENST00000397643 DACT3Q96B18 629 aaPredicted RBP13.52□□□□□ -0.25
CUX2-202ENST00000397643 DIRC2Q96SL1 478 aa13.52□□□□□ -0.25
CUX2-202ENST00000397643 ZNF556Q9HAH1 456 aa13.52□□□□□ -0.25
CUX2-202ENST00000397643 UNC119BA6NIH7 251 aa13.51□□□□□ -0.25
CUX2-202ENST00000397643 SAC3D1A6NKF1 404 aa13.51□□□□□ -0.25
CUX2-202ENST00000397643 CENPBD1B2RD01 187 aa13.51□□□□□ -0.25
CUX2-202ENST00000397643 H3BSA7 217 aa13.51□□□□□ -0.25
CUX2-202ENST00000397643 TRMUO75648 421 aaKnown RBP13.51□□□□□ -0.25
CUX2-202ENST00000397643 GPANK1O95872 356 aa13.51□□□□□ -0.25
CUX2-202ENST00000397643 GASTP01350 101 aa13.51□□□□□ -0.25
CUX2-202ENST00000397643 PPIAL4GP0DN37 164 aa13.51□□□□□ -0.25
CUX2-202ENST00000397643 MTNR1AP48039 350 aa13.51□□□□□ -0.25
CUX2-202ENST00000397643 PPP1CBP62140 327 aa13.51□□□□□ -0.25
CUX2-202ENST00000397643 BTG1P62324 171 aa13.51□□□□□ -0.25
CUX2-202ENST00000397643 TNFAIP6P98066 277 aaPredicted RBP13.51□□□□□ -0.25
CUX2-202ENST00000397643 PSG4Q00888 419 aa13.51□□□□□ -0.25
CUX2-202ENST00000397643 RPL18Q07020 188 aaKnown RBP13.51□□□□□ -0.25
CUX2-202ENST00000397643 TSPAN31Q12999 210 aa13.51□□□□□ -0.25
CUX2-202ENST00000397643 RHOUQ7L0Q8 258 aa13.51□□□□□ -0.25
CUX2-202ENST00000397643 KLHL36Q8N4N3 616 aa13.51□□□□□ -0.25
CUX2-202ENST00000397643 ATG16L2Q8NAA4 619 aa13.51□□□□□ -0.25
CUX2-202ENST00000397643 OR52E2Q8NGJ4 325 aa13.51□□□□□ -0.25
CUX2-202ENST00000397643 ABHD4Q8TB40 342 aa13.51□□□□□ -0.25
CUX2-202ENST00000397643 UPRTQ96BW1 309 aa13.51□□□□□ -0.25
CUX2-202ENST00000397643 FEVQ99581 238 aa13.51□□□□□ -0.25
CUX2-202ENST00000397643 DGCR6LQ9BY27 220 aa13.51□□□□□ -0.25
CUX2-202ENST00000397643 NDEL1Q9GZM8 345 aa13.51□□□□□ -0.25
CUX2-202ENST00000397643 WNT5BQ9H1J7 359 aa13.51□□□□□ -0.25
CUX2-202ENST00000397643 CCNB1IP1Q9NPC3 277 aa13.51□□□□□ -0.25
CUX2-202ENST00000397643 KIF17Q9P2E2 1029 aa13.51□□□□□ -0.25
CUX2-202ENST00000397643 STX18Q9P2W9 335 aaKnown RBP13.51□□□□□ -0.25
CUX2-202ENST00000397643 EIF3KQ9UBQ5 218 aaKnown RBP13.51□□□□□ -0.25
CUX2-202ENST00000397643 OAZ3Q9UMX2 235 aa13.51□□□□□ -0.25
CUX2-202ENST00000397643 BLOC1S5-TXNDC5H3BN57 136 aa13.5□□□□□ -0.25
CUX2-202ENST00000397643 F13BP05160 661 aa13.5□□□□□ -0.25
CUX2-202ENST00000397643 ACADSP16219 412 aa13.5□□□□□ -0.25
CUX2-202ENST00000397643 GSTM3P21266 225 aa13.5□□□□□ -0.25
CUX2-202ENST00000397643 PRKACGP22612 351 aa13.5□□□□□ -0.25
CUX2-202ENST00000397643 GSSP48637 474 aa13.5□□□□□ -0.25
CUX2-202ENST00000397643 GDI2P50395 445 aaKnown RBP13.5□□□□□ -0.25
CUX2-202ENST00000397643 FMODQ06828 376 aa13.5□□□□□ -0.25
CUX2-202ENST00000397643 COX10Q12887 443 aa13.5□□□□□ -0.25
CUX2-202ENST00000397643 ZBED5Q49AG3 693 aa13.5□□□□□ -0.25
CUX2-202ENST00000397643 ARMC4Q5T2S8 1044 aa13.5□□□□□ -0.25
CUX2-202ENST00000397643 ZNF774Q6NX45 483 aa13.5□□□□□ -0.25
CUX2-202ENST00000397643 Q6ZR03 302 aa13.5□□□□□ -0.25
CUX2-202ENST00000397643 HS3ST5Q8IZT8 346 aa13.5□□□□□ -0.25
CUX2-202ENST00000397643 OR13C2Q8NGS9 318 aa13.5□□□□□ -0.25
CUX2-202ENST00000397643 DNAJC9Q8WXX5 260 aa13.5□□□□□ -0.25
CUX2-202ENST00000397643 CITED1Q99966 193 aa13.5□□□□□ -0.25
CUX2-202ENST00000397643 OSBPL10Q9BXB5 764 aa13.5□□□□□ -0.25
CUX2-202ENST00000397643 GABARAPL1Q9H0R8 117 aa13.5□□□□□ -0.25
CUX2-202ENST00000397643 PRDM13Q9H4Q3 707 aa13.5□□□□□ -0.25
CUX2-202ENST00000397643 OR5V1Q9UGF6 321 aa13.5□□□□□ -0.25
CUX2-202ENST00000397643 CEACAM18A8MTB9 384 aa13.49□□□□□ -0.25
CUX2-202ENST00000397643 CDC42EP2O14613 210 aa13.49□□□□□ -0.25
CUX2-202ENST00000397643 HOXA3O43365 443 aaPredicted RBP13.49□□□□□ -0.25
CUX2-202ENST00000397643 ERVK-25P63136 954 aa13.49□□□□□ -0.25
CUX2-202ENST00000397643 RELBQ01201 579 aa13.49□□□□□ -0.25
CUX2-202ENST00000397643 PSG7Q13046 419 aa13.49□□□□□ -0.25
CUX2-202ENST00000397643 RIPK1Q13546 671 aa13.49□□□□□ -0.25
CUX2-202ENST00000397643 ZMAT1Q5H9K5 638 aa13.49□□□□□ -0.25
CUX2-202ENST00000397643 UNQ6126/PRO20091Q6UXV3 157 aa13.49□□□□□ -0.25
CUX2-202ENST00000397643 CD300LDQ6UXZ3 194 aa13.49□□□□□ -0.25
CUX2-202ENST00000397643 C1orf174Q8IYL3 243 aa13.49□□□□□ -0.25
CUX2-202ENST00000397643 KIR3DL3Q8N743 410 aa13.49□□□□□ -0.25
CUX2-202ENST00000397643 OR51A7Q8NH64 312 aa13.49□□□□□ -0.25
CUX2-202ENST00000397643 HDAC2Q92769 488 aaKnown RBP13.49□□□□□ -0.25
CUX2-202ENST00000397643 SAMD8Q96LT4 415 aa13.49□□□□□ -0.25
CUX2-202ENST00000397643 C9orf16Q9BUW7 83 aa13.49□□□□□ -0.25
CUX2-202ENST00000397643 OR2H1Q9GZK4 316 aa13.49□□□□□ -0.25
CUX2-202ENST00000397643 MMP27Q9H306 513 aa13.49□□□□□ -0.25
CUX2-202ENST00000397643 POFUT1Q9H488 388 aa13.49□□□□□ -0.25
CUX2-202ENST00000397643 SMURF2Q9HAU4 748 aa13.49□□□□□ -0.25
CUX2-202ENST00000397643 RNPEPL1Q9HAU8 725 aa13.49□□□□□ -0.25
CUX2-202ENST00000397643 HIF3AQ9Y2N7 669 aa13.49□□□□□ -0.25
CUX2-202ENST00000397643 TRAV27A0A087WT01 109 aa13.48□□□□□ -0.25
CUX2-202ENST00000397643 TRAV40A0A0B4J280 105 aa13.48□□□□□ -0.25
CUX2-202ENST00000397643 A0A1B0GUS0 222 aa13.48□□□□□ -0.25
CUX2-202ENST00000397643 A0A1W2PRG6 482 aa13.48□□□□□ -0.25
CUX2-202ENST00000397643 FAM181BA6NEQ2 426 aa13.48□□□□□ -0.25
CUX2-202ENST00000397643 MCIDASD6RGH6 385 aa13.48□□□□□ -0.25
CUX2-202ENST00000397643 PTP4A3O75365 173 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms