RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 ZNF354AO60765 605 aaPredicted RBP12.47□□□□□ -0.41
COL4A1-201ENST00000375820 DFFBO76075 338 aa12.47□□□□□ -0.41
COL4A1-201ENST00000375820 NRASP01111 189 aa12.47□□□□□ -0.41
COL4A1-201ENST00000375820 APOBEC1P41238 236 aaKnown RBP12.47□□□□□ -0.41
COL4A1-201ENST00000375820 RXFP4Q8TDU9 374 aa12.47□□□□□ -0.41
COL4A1-201ENST00000375820 PPP5D1E7EU14 171 aa12.47□□□□□ -0.41
COL4A1-201ENST00000375820 ST6GAL1P15907 406 aa12.47□□□□□ -0.41
COL4A1-201ENST00000375820 SPI1P17947 270 aa12.47□□□□□ -0.41
COL4A1-201ENST00000375820 ACHEP22303 614 aa12.47□□□□□ -0.41
COL4A1-201ENST00000375820 CLDN15P56746 228 aa12.47□□□□□ -0.41
COL4A1-201ENST00000375820 OR10V1Q8NGI7 309 aa12.47□□□□□ -0.41
COL4A1-201ENST00000375820 SCARB1Q8WTV0 552 aa12.47□□□□□ -0.41
COL4A1-201ENST00000375820 ZNF230Q9UIE0 474 aaPredicted RBP12.47□□□□□ -0.41
COL4A1-201ENST00000375820 SNTB1Q13884 538 aaKnown RBP12.47□□□□□ -0.41
COL4A1-201ENST00000375820 TMEM52BQ4KMG9 183 aa12.47□□□□□ -0.41
COL4A1-201ENST00000375820 SLC35D3Q5M8T2 416 aa12.47□□□□□ -0.41
COL4A1-201ENST00000375820 METRNLQ641Q3 311 aa12.47□□□□□ -0.41
COL4A1-201ENST00000375820 OLIG1Q8TAK6 271 aa12.47□□□□□ -0.41
COL4A1-201ENST00000375820 HINT3Q9NQE9 182 aaKnown RBP12.47□□□□□ -0.41
COL4A1-201ENST00000375820 M0R135 149 aa12.47□□□□□ -0.41
COL4A1-201ENST00000375820 SYT5O00445 386 aa12.47□□□□□ -0.41
COL4A1-201ENST00000375820 XRCC2O43543 280 aa12.47□□□□□ -0.41
COL4A1-201ENST00000375820 FCMRO60667 390 aa12.47□□□□□ -0.41
COL4A1-201ENST00000375820 FUCA1P04066 466 aa12.47□□□□□ -0.41
COL4A1-201ENST00000375820 PTTG1IPP53801 180 aa12.47□□□□□ -0.41
COL4A1-201ENST00000375820 RPL18Q07020 188 aaKnown RBP12.47□□□□□ -0.41
COL4A1-201ENST00000375820 RTL8BQ17RB0 113 aa12.47□□□□□ -0.41
COL4A1-201ENST00000375820 C17orf107Q6ZR85 190 aa12.47□□□□□ -0.41
COL4A1-201ENST00000375820 CDH26Q8IXH8 852 aa12.47□□□□□ -0.41
COL4A1-201ENST00000375820 DTWD2Q8NBA8 298 aa12.47□□□□□ -0.41
COL4A1-201ENST00000375820 ZNF799Q96GE5 643 aa12.47□□□□□ -0.41
COL4A1-201ENST00000375820 ARRDC1-AS1Q9H2J1 176 aa12.47□□□□□ -0.41
COL4A1-201ENST00000375820 AUNIPQ9H7T9 357 aa12.47□□□□□ -0.41
COL4A1-201ENST00000375820 PLEKHB1Q9UF11 243 aaPredicted RBP12.47□□□□□ -0.41
COL4A1-201ENST00000375820 ACOT8O14734 319 aa12.46□□□□□ -0.41
COL4A1-201ENST00000375820 SPRY3O43610 288 aa12.46□□□□□ -0.41
COL4A1-201ENST00000375820 METTL15P1P0C7V9 234 aa12.46□□□□□ -0.41
COL4A1-201ENST00000375820 SAXO2Q658L1 398 aa12.46□□□□□ -0.41
COL4A1-201ENST00000375820 TMEM230Q96A57 120 aa12.46□□□□□ -0.41
COL4A1-201ENST00000375820 SLC25A46Q96AG3 418 aa12.46□□□□□ -0.41
COL4A1-201ENST00000375820 ACY3Q96HD9 319 aa12.46□□□□□ -0.41
COL4A1-201ENST00000375820 DAPP1Q9UN19 280 aa12.46□□□□□ -0.41
COL4A1-201ENST00000375820 CHD4Q14839 1912 aa12.46□□□□□ -0.41
COL4A1-201ENST00000375820 DBX1A6NMT0 343 aa12.46□□□□□ -0.41
COL4A1-201ENST00000375820 TMPRSS11DO60235 418 aa12.46□□□□□ -0.41
COL4A1-201ENST00000375820 LRP3O75074 770 aa12.46□□□□□ -0.41
COL4A1-201ENST00000375820 SBK2P0C263 348 aa12.46□□□□□ -0.41
COL4A1-201ENST00000375820 GNG10P50151 68 aa12.46□□□□□ -0.41
COL4A1-201ENST00000375820 PYCR3Q53H96 274 aa12.46□□□□□ -0.41
COL4A1-201ENST00000375820 SEH1LQ96EE3 360 aa12.46□□□□□ -0.41
COL4A1-201ENST00000375820 ZBED3Q96IU2 234 aaPredicted RBP12.46□□□□□ -0.41
COL4A1-201ENST00000375820 TMEM38AQ9H6F2 299 aa12.46□□□□□ -0.41
COL4A1-201ENST00000375820 IL2RAP01589 272 aa12.46□□□□□ -0.41
COL4A1-201ENST00000375820 PPP2CBP62714 309 aa12.46□□□□□ -0.41
COL4A1-201ENST00000375820 PPP2CAP67775 309 aa12.46□□□□□ -0.41
COL4A1-201ENST00000375820 ZNF85Q03923 595 aa12.46□□□□□ -0.41
COL4A1-201ENST00000375820 PELI3Q8N2H9 469 aa12.46□□□□□ -0.41
COL4A1-201ENST00000375820 OR52N1Q8NH53 320 aa12.46□□□□□ -0.41
COL4A1-201ENST00000375820 ACER3Q9NUN7 267 aa12.46□□□□□ -0.41
COL4A1-201ENST00000375820 ONECUT1Q9UBC0 465 aa12.46□□□□□ -0.41
COL4A1-201ENST00000375820 LRP6O75581 1613 aa12.46□□□□□ -0.41
COL4A1-201ENST00000375820 GPR31O00270 319 aa12.46□□□□□ -0.41
COL4A1-201ENST00000375820 ST8SIA3O43173 380 aa12.46□□□□□ -0.41
COL4A1-201ENST00000375820 MT-ATP6P00846 226 aa12.46□□□□□ -0.41
COL4A1-201ENST00000375820 PDGFBP01127 241 aaPredicted RBP12.46□□□□□ -0.41
COL4A1-201ENST00000375820 ZNF26P17031 533 aaPredicted RBP12.46□□□□□ -0.41
COL4A1-201ENST00000375820 PRDX4Q13162 271 aa12.46□□□□□ -0.41
COL4A1-201ENST00000375820 AKR7LQ8NHP1 331 aa12.46□□□□□ -0.41
COL4A1-201ENST00000375820 NXF2Q9GZY0 626 aaKnown RBP12.46□□□□□ -0.41
COL4A1-201ENST00000375820 TIMM10BQ9Y5J6 103 aa12.46□□□□□ -0.41
COL4A1-201ENST00000375820 GPM6AP51674 278 aa12.46□□□□□ -0.42
COL4A1-201ENST00000375820 ELAVL1Q15717 326 aaKnown RBP12.46□□□□□ -0.42
COL4A1-201ENST00000375820 ZNF620Q6ZNG0 422 aa12.46□□□□□ -0.42
COL4A1-201ENST00000375820 MARCH1Q8TCQ1 289 aa12.46□□□□□ -0.42
COL4A1-201ENST00000375820 LRFN3Q9BTN0 628 aa12.46□□□□□ -0.42
COL4A1-201ENST00000375820 ZNF768Q9H5H4 540 aaKnown RBP12.46□□□□□ -0.42
COL4A1-201ENST00000375820 IKZF5Q9H5V7 419 aa12.46□□□□□ -0.42
COL4A1-201ENST00000375820 GALR2O43603 387 aaPredicted RBP12.45□□□□□ -0.42
COL4A1-201ENST00000375820 TM4SF4P48230 202 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 TMEM88Q6PEY1 159 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 DRAM2Q6UX65 266 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 PLXDC2Q6UX71 529 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 RSPO2Q6UXX9 243 aaPredicted RBP12.45□□□□□ -0.42
COL4A1-201ENST00000375820 GABRG1Q8N1C3 465 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 SLC38A9Q8NBW4 561 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 ZNF727A8MUV8 499 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 GFERP55789 205 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 CST9Q5W186 159 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 OR5M8Q8NGP6 311 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 STACQ99469 402 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 PSENENQ9NZ42 101 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 SERTM1A2A2V5 107 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 OPN1MWP04001 364 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 OPN1MW2P0DN77 364 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 OPN1MW3P0DN78 364 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 FOXC1Q12948 553 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 AGERQ15109 404 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 DUSP6Q16828 381 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 SLC24A4Q8NFF2 622 aa12.45□□□□□ -0.42
COL4A1-201ENST00000375820 OR13D1Q8NGV5 346 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms