RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 HPNP05981 417 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 GSTP1P09211 210 aaKnown RBP7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 CD3GP09693 182 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 ACSM4P0C7M7 580 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 GSTT2P0CG29 244 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 CD46P15529 392 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 LORP23490 312 aaPredicted RBP7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 GIFP27352 417 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 AVPR2P30518 371 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 OTX1P32242 354 aaPredicted RBP7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 BTCP35070 178 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 THBS4P35443 961 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 RRADP55042 308 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 CARD18P57730 90 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 DGCR2P98153 550 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 IKZF1Q13422 519 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 GLYATL3Q5SZD4 288 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 ABHD17BQ5VST6 288 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 LPCAT3Q6P1A2 487 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 IGF2-ASQ6U949 168 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 DRAM2Q6UX65 266 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 GPAT4Q86UL3 456 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 GPR137CQ8N3F9 429 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 ASCC1Q8N9N2 400 aaKnown RBP7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 OR1M1Q8NGA1 313 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 GPX8Q8TED1 209 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 PMEPA1Q969W9 287 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 FAM46BQ96A09 425 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 PRRX2Q99811 253 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 PRRT1Q99946 306 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 URM1Q9BTM9 101 aaKnown RBP7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 LINC00470Q9BZP3 86 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 CST11Q9H112 138 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 SLC25A18Q9H1K4 315 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 ARRDC1-AS1Q9H2J1 176 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 SEC61A2Q9H9S3 476 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 CENPMQ9NSP4 180 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 MED29Q9NX70 200 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 P4HTMQ9NXG6 502 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 SLC2A8Q9NY64 477 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 FOXD3Q9UJU5 478 aaPredicted RBP7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 SZT2Q5T011 3432 aa7.73□□□□□ -1.17
SNRNP40-202ENST00000373720 ASXL3Q9C0F0 2248 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 FER1L5A0AVI2 2057 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 IGKV3D-15A0A087WSY6 115 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 MEIKINA0A087WXM9 373 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 A0A0A6YYJ9 748 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 LOC100996750A0A140TA64 210 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 LINC00854A0A1B0GVQ3 168 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 A0A1W2PPL8 197 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 CIB4A0PJX0 185 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 PATE3B3GLJ2 98 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 STMND1H3BQB6 276 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 KLRC4-KLRK1H3BQV0 150 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 PSMD9O00233 223 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 EIF1AYO14602 144 aaKnown RBP7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 GMFGO60234 142 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 DOK2O60496 412 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 FARS2O95363 451 aaKnown RBP7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 ACTL6AO96019 429 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 CYB5AP00167 134 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 MT-CO3P00414 261 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 PDGFBP01127 241 aaPredicted RBP7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 IGLV3-1P01715 115 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 TTRP02766 147 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 ITGB2P05107 769 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 ITGA5P08648 1049 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 SULT1A3P0DMM9 295 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 SULT1A4P0DMN0 295 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 CCL3P10147 92 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 COX5BP10606 129 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 CD59P13987 128 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 ECI1P42126 302 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 EIF1AXP47813 144 aaKnown RBP7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 CLDN6P56747 220 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 GMFBP60983 142 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 UBE2MP61081 183 aaKnown RBP7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 GK2Q14410 553 aaPredicted RBP7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 ETFDHQ16134 617 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 NSUN5P2Q63ZY6 315 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 GLDNQ6ZMI3 551 aaPredicted RBP7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 C16orf47Q6ZP98 133 aaPredicted RBP7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 SPATC1Q76KD6 591 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 ABHD12BQ7Z5M8 362 aaPredicted RBP7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 TMEM123Q8N131 208 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 MEIOBQ8N635 442 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 DNAAF1Q8NEP3 725 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 STEAP2Q8NFT2 490 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 OR51D1Q8NGF3 324 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 OR56B1Q8NGI3 324 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 OR52I2Q8NH67 350 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 OR2V1Q8NHB1 315 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 CT55Q8WUE5 264 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 SPSB1Q96BD6 273 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 MRPS24Q96EL2 167 aaKnown RBP7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 AMELYQ99218 206 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 KLHDC3Q9BQ90 382 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 TMPRSS13Q9BYE2 586 aa7.72□□□□□ -1.17
SNRNP40-202ENST00000373720 KRTAP4-6Q9BYQ5 205 aa7.72□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms