RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 KLK3P07288 261 aaPredicted RBP18.48■□□□□ 0.55
CCDC88B-203ENST00000359902 ZNF43P17038 809 aa18.48■□□□□ 0.55
CCDC88B-203ENST00000359902 C2orf68Q2NKX9 166 aa18.48■□□□□ 0.55
CCDC88B-203ENST00000359902 OR8H3Q8N146 312 aa18.48■□□□□ 0.55
CCDC88B-203ENST00000359902 MUC20Q8N307 709 aaPredicted RBP18.48■□□□□ 0.55
CCDC88B-203ENST00000359902 FAM109AQ8N4B1 249 aa18.48■□□□□ 0.55
CCDC88B-203ENST00000359902 UXS1Q8NBZ7 420 aa18.48■□□□□ 0.55
CCDC88B-203ENST00000359902 OR2AJ1Q8NGZ0 328 aa18.48■□□□□ 0.55
CCDC88B-203ENST00000359902 MR1Q95460 341 aa18.48■□□□□ 0.55
CCDC88B-203ENST00000359902 SLCO5A1Q9H2Y9 848 aa18.48■□□□□ 0.55
CCDC88B-203ENST00000359902 TMEM138Q9NPI0 162 aa18.48■□□□□ 0.55
CCDC88B-203ENST00000359902 PRDM6Q9NQX0 595 aa18.48■□□□□ 0.55
CCDC88B-203ENST00000359902 POLR1DQ9Y2S0 133 aa18.48■□□□□ 0.55
CCDC88B-203ENST00000359902 LOC102725191A0A1B0GVB3 256 aa18.47■□□□□ 0.55
CCDC88B-203ENST00000359902 PATE3B3GLJ2 98 aa18.47■□□□□ 0.55
CCDC88B-203ENST00000359902 ITGB2P05107 769 aa18.47■□□□□ 0.55
CCDC88B-203ENST00000359902 CCL4P13236 92 aa18.47■□□□□ 0.55
CCDC88B-203ENST00000359902 FKBP2P26885 142 aaKnown RBP18.47■□□□□ 0.55
CCDC88B-203ENST00000359902 CAPZA1P52907 286 aa18.47■□□□□ 0.55
CCDC88B-203ENST00000359902 HDDC2Q7Z4H3 204 aa18.47■□□□□ 0.55
CCDC88B-203ENST00000359902 PAQR4Q8N4S7 273 aaPredicted RBP18.47■□□□□ 0.55
CCDC88B-203ENST00000359902 ZBTB8AQ96BR9 441 aa18.47■□□□□ 0.55
CCDC88B-203ENST00000359902 B3GNT4Q9C0J1 378 aa18.47■□□□□ 0.55
CCDC88B-203ENST00000359902 ZNF700Q9H0M5 742 aa18.47■□□□□ 0.55
CCDC88B-203ENST00000359902 CLEC4MQ9H2X3 399 aaPredicted RBP18.47■□□□□ 0.55
CCDC88B-203ENST00000359902 EXO5Q9H790 373 aa18.47■□□□□ 0.55
CCDC88B-203ENST00000359902 RAB22AQ9UL26 194 aa18.47■□□□□ 0.55
CCDC88B-203ENST00000359902 PTRH2Q9Y3E5 179 aaKnown RBP18.47■□□□□ 0.55
CCDC88B-203ENST00000359902 WIPF3A6NGB9 483 aa18.46■□□□□ 0.55
CCDC88B-203ENST00000359902 ZNF878C9JN71 531 aa18.46■□□□□ 0.55
CCDC88B-203ENST00000359902 SULT2B1O00204 365 aa18.46■□□□□ 0.55
CCDC88B-203ENST00000359902 NTN3O00634 580 aaPredicted RBP18.46■□□□□ 0.55
CCDC88B-203ENST00000359902 KLF7O75840 302 aaPredicted RBP18.46■□□□□ 0.55
CCDC88B-203ENST00000359902 MELTFP08582 738 aa18.46■□□□□ 0.55
CCDC88B-203ENST00000359902 QDPRP09417 244 aa18.46■□□□□ 0.55
CCDC88B-203ENST00000359902 GRK1Q15835 563 aa18.46■□□□□ 0.55
CCDC88B-203ENST00000359902 FAM209AQ5JX71 171 aa18.46■□□□□ 0.55
CCDC88B-203ENST00000359902 ZNF529Q6P280 563 aa18.46■□□□□ 0.55
CCDC88B-203ENST00000359902 RHOUQ7L0Q8 258 aa18.46■□□□□ 0.55
CCDC88B-203ENST00000359902 GALNT16Q8N428 558 aa18.46■□□□□ 0.55
CCDC88B-203ENST00000359902 ACBD4Q8NC06 268 aa18.46■□□□□ 0.55
CCDC88B-203ENST00000359902 AGBL5Q8NDL9 886 aa18.46■□□□□ 0.55
CCDC88B-203ENST00000359902 OR5D14Q8NGL3 314 aa18.46■□□□□ 0.55
CCDC88B-203ENST00000359902 OR51E1Q8TCB6 317 aa18.46■□□□□ 0.55
CCDC88B-203ENST00000359902 TINAGL1Q9GZM7 467 aaPredicted RBP18.46■□□□□ 0.55
CCDC88B-203ENST00000359902 MED12Q93074 2177 aa18.46■□□□□ 0.55
CCDC88B-203ENST00000359902 M0QYG6 137 aa18.46■□□□□ 0.55
CCDC88B-203ENST00000359902 COX6A1P12074 109 aa18.46■□□□□ 0.55
CCDC88B-203ENST00000359902 H2BFSP57053 126 aa18.46■□□□□ 0.55
CCDC88B-203ENST00000359902 GABREP78334 506 aa18.46■□□□□ 0.55
CCDC88B-203ENST00000359902 SLC35A1P78382 337 aa18.46■□□□□ 0.55
CCDC88B-203ENST00000359902 QRFPP83859 136 aa18.46■□□□□ 0.55
CCDC88B-203ENST00000359902 TMPPEQ6ZT21 453 aa18.46■□□□□ 0.55
CCDC88B-203ENST00000359902 NKD1Q969G9 470 aa18.46■□□□□ 0.55
CCDC88B-203ENST00000359902 ASH2LQ9UBL3 628 aa18.46■□□□□ 0.55
CCDC88B-203ENST00000359902 METTL21EPA6NDL7 271 aa18.45■□□□□ 0.54
CCDC88B-203ENST00000359902 TMEM235A6NFC5 223 aa18.45■□□□□ 0.54
CCDC88B-203ENST00000359902 ZNF726A6NNF4 738 aa18.45■□□□□ 0.54
CCDC88B-203ENST00000359902 LEUTXA8MZ59 168 aa18.45■□□□□ 0.54
CCDC88B-203ENST00000359902 RAB27BO00194 218 aa18.45■□□□□ 0.54
CCDC88B-203ENST00000359902 PRKXP51817 358 aa18.45■□□□□ 0.54
CCDC88B-203ENST00000359902 UBE2MP61081 183 aaKnown RBP18.45■□□□□ 0.54
CCDC88B-203ENST00000359902 EXOSC2Q13868 293 aaKnown RBP18.45■□□□□ 0.54
CCDC88B-203ENST00000359902 KCNMB1Q16558 191 aa18.45■□□□□ 0.54
CCDC88B-203ENST00000359902 OPN5Q6U736 354 aa18.45■□□□□ 0.54
CCDC88B-203ENST00000359902 CDH26Q8IXH8 852 aa18.45■□□□□ 0.54
CCDC88B-203ENST00000359902 GTPBP8Q8N3Z3 284 aaPredicted RBP18.45■□□□□ 0.54
CCDC88B-203ENST00000359902 SLC22A24Q8N4F4 322 aa18.45■□□□□ 0.54
CCDC88B-203ENST00000359902 OR2AK2Q8NG84 335 aa18.45■□□□□ 0.54
CCDC88B-203ENST00000359902 AQP3Q92482 292 aa18.45■□□□□ 0.54
CCDC88B-203ENST00000359902 ALX4Q9H161 411 aaPredicted RBP18.45■□□□□ 0.54
CCDC88B-203ENST00000359902 KLK13Q9UKR3 277 aa18.45■□□□□ 0.54
CCDC88B-203ENST00000359902 TEX51A0A1B0GUA7 166 aa18.45■□□□□ 0.54
CCDC88B-203ENST00000359902 LINC00862A6NCI5 91 aa18.45■□□□□ 0.54
CCDC88B-203ENST00000359902 C19orf67A6NJJ6 358 aa18.45■□□□□ 0.54
CCDC88B-203ENST00000359902 RER1O15258 196 aa18.45■□□□□ 0.54
CCDC88B-203ENST00000359902 SIX6O95475 246 aa18.45■□□□□ 0.54
CCDC88B-203ENST00000359902 CXCL2P19875 107 aa18.45■□□□□ 0.54
CCDC88B-203ENST00000359902 ZFP36L1Q07352 338 aaKnown RBP18.45■□□□□ 0.54
CCDC88B-203ENST00000359902 UNC119Q13432 240 aa18.45■□□□□ 0.54
CCDC88B-203ENST00000359902 EXT1Q16394 746 aa18.45■□□□□ 0.54
CCDC88B-203ENST00000359902 UQCC2Q9BRT2 126 aa18.45■□□□□ 0.54
CCDC88B-203ENST00000359902 TMPRSS13Q9BYE2 586 aa18.45■□□□□ 0.54
CCDC88B-203ENST00000359902 PNRC2Q9NPJ4 139 aaKnown RBP18.45■□□□□ 0.54
CCDC88B-203ENST00000359902 ZNF107Q9UII5 783 aaPredicted RBP18.45■□□□□ 0.54
CCDC88B-203ENST00000359902 HS3ST3B1Q9Y662 390 aa18.45■□□□□ 0.54
CCDC88B-203ENST00000359902 A0A087WZY1 265 aa18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 CYB5AP00167 134 aa18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 CFDP00746 253 aaPredicted RBP18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 IFNA7P01567 189 aa18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 CD74P04233 296 aa18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 ZNF735P0CB33 412 aa18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 RAB3AP20336 220 aa18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 TAF13Q15543 124 aa18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 ZNF260Q3ZCT1 412 aa18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 RAB12Q6IQ22 244 aa18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 TMEM81Q6P7N7 255 aa18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 IDO2Q6ZQW0 420 aa18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 OR13C9Q8NGT0 318 aa18.44■□□□□ 0.54
CCDC88B-203ENST00000359902 PNPLA2Q96AD5 504 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms