RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 B9D1Q9UPM9 204 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 AMDHD2Q9Y303 409 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 MUC22E2RYF6 1773 aaPredicted RBP6.08□□□□□ -1.44
VPS39-202ENST00000348544 DNAH14Q0VDD8 3507 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 A0A0A6YYH2 397 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 A6NJ64 397 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 HRKO00198 91 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 CYR61O00622 381 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 GPR75O95800 540 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 TXNDC12O95881 172 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 PMP2P02689 132 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 HOXB5P09067 269 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 SLC35G6P0C7Q6 338 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 FSTP19883 344 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 HOXA5P20719 270 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 ACTR1BP42025 376 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 ZNF157P51786 506 aaPredicted RBP6.08□□□□□ -1.44
VPS39-202ENST00000348544 RPS15AP62244 130 aaKnown RBP6.08□□□□□ -1.44
VPS39-202ENST00000348544 SUPT4H1P63272 117 aaKnown RBP6.08□□□□□ -1.44
VPS39-202ENST00000348544 CYCSP99999 105 aaKnown RBP6.08□□□□□ -1.44
VPS39-202ENST00000348544 EGR4Q05215 589 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 RPL18Q07020 188 aaKnown RBP6.08□□□□□ -1.44
VPS39-202ENST00000348544 SPEM2Q0P670 501 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 SRSF5Q13243 272 aaKnown RBP6.08□□□□□ -1.44
VPS39-202ENST00000348544 UNC119Q13432 240 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 ELAVL3Q14576 367 aaKnown RBP6.08□□□□□ -1.44
VPS39-202ENST00000348544 ZNF141Q15928 474 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 NNATQ16517 81 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 ANKRD55Q3KP44 614 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 OR2A2Q6IF42 318 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 ZNF574Q6ZN55 896 aaPredicted RBP6.08□□□□□ -1.44
VPS39-202ENST00000348544 C10orf53Q8N6V4 93 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 OR2I1PQ8NGU4 316 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 SLAMF9Q96A28 289 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 RAB3CQ96E17 227 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 SLC25A44Q96H78 314 aaPredicted RBP6.08□□□□□ -1.44
VPS39-202ENST00000348544 ZNF587Q96SQ5 575 aaPredicted RBP6.08□□□□□ -1.44
VPS39-202ENST00000348544 C5orf66Q9H5L9 145 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 SPACA1Q9HBV2 294 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 MMP25Q9NPA2 562 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 ST6GALNAC1Q9NSC7 600 aaPredicted RBP6.08□□□□□ -1.44
VPS39-202ENST00000348544 GDE1Q9NZC3 331 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 LRIT1Q9P2V4 623 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 STARD10Q9Y365 291 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 POMT1Q9Y6A1 747 aa6.08□□□□□ -1.44
VPS39-202ENST00000348544 EDDM13A0A1B0GTR0 161 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 RHPN2P1A8MT19 583 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 OIP5O43482 229 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 EML2O95834 649 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 TIMP1P01033 207 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 IFNA2P01563 188 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 ASAH2BP0C7U1 165 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 HKR1P10072 659 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 GNB3P16520 340 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 PI3P19957 117 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 S1PR1P21453 382 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 GRK6P43250 576 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 RAB5CP51148 216 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 IL15RAQ13261 267 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 CLINT1Q14677 625 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 TCEA2Q15560 299 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 C1orf100Q5SVJ3 147 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 NSUN5P2Q63ZY6 315 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 CLEC18BQ6UXF7 455 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 NPSR1Q6W5P4 371 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 TMEM184AQ6ZMB5 413 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 POC1AQ8NBT0 407 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 KREMEN2Q8NCW0 462 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 OR10H5Q8NGA6 315 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 OR4C3Q8NH37 302 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 FLVCR1-AS1Q8TAF5 88 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 ANKRD9Q96BM1 317 aaPredicted RBP6.07□□□□□ -1.44
VPS39-202ENST00000348544 KLHDC3Q9BQ90 382 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 CHST5Q9GZS9 411 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 SLC26A1Q9H2B4 701 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 RGCCQ9H4X1 137 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 GRHPRQ9UBQ7 328 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 MAFFQ9ULX9 164 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 TMEM14AQ9Y6G1 99 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 TBC1D3DA0A087WVF3 549 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 LOC390937A0A1W2PQ73 354 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 HSPB2A8KAH6 182 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 TBC1D3LB9A6J9 549 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 SOX1O00570 391 aaPredicted RBP6.07□□□□□ -1.44
VPS39-202ENST00000348544 CSTAP01040 98 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 TBC1D3HP0C7X1 549 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 NDUFB7P17568 137 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 THBS4P35443 961 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 SNCAP37840 140 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 HMGN3Q15651 99 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 HSPB2Q16082 182 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 TMEM128Q5BJH2 165 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 TBC1D3CQ6IPX1 549 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 PTCRAQ6ISU1 281 aaPredicted RBP6.07□□□□□ -1.44
VPS39-202ENST00000348544 CATSPERDQ86XM0 798 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 C1QL4Q86Z23 238 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 ZNF679Q8IYX0 411 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 TBC1D3Q8IZP1 549 aaPredicted RBP6.07□□□□□ -1.44
VPS39-202ENST00000348544 GATSQ8NAP1 163 aa6.07□□□□□ -1.44
VPS39-202ENST00000348544 KDF1Q8NAX2 398 aaPredicted RBP6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms