RNA–Protein interactions for RNA: ENST00000340958.3

CLDN4-201, Transcript of claudin 4, humanhuman

APPRIS P1 BASIC

Gene CLDN4, Length 1,831 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN4-201ENST00000340958 MMP27Q9H306 513 aa15.2■□□□□ 0.02
CLDN4-201ENST00000340958 NOX4Q9NPH5 578 aa15.2■□□□□ 0.02
CLDN4-201ENST00000340958 G6PC2Q9NQR9 355 aa15.2■□□□□ 0.02
CLDN4-201ENST00000340958 DDX28Q9NUL7 540 aaKnown RBP15.2■□□□□ 0.02
CLDN4-201ENST00000340958 TTLL8A6PVC2 850 aa15.19■□□□□ 0.02
CLDN4-201ENST00000340958 SRSF10O75494 262 aaKnown RBP15.19■□□□□ 0.02
CLDN4-201ENST00000340958 UBCP0CG48 685 aaKnown RBP15.19■□□□□ 0.02
CLDN4-201ENST00000340958 SLC2A1P11166 492 aa15.19■□□□□ 0.02
CLDN4-201ENST00000340958 S100A5P33763 92 aa15.19■□□□□ 0.02
CLDN4-201ENST00000340958 MAGEB1P43366 347 aa15.19■□□□□ 0.02
CLDN4-201ENST00000340958 FOXG1P55316 489 aaPredicted RBP15.19■□□□□ 0.02
CLDN4-201ENST00000340958 HIST1H3AP68431 136 aa15.19■□□□□ 0.02
CLDN4-201ENST00000340958 TGFBR3Q03167 851 aa15.19■□□□□ 0.02
CLDN4-201ENST00000340958 RBPJQ06330 500 aa15.19■□□□□ 0.02
CLDN4-201ENST00000340958 ECH1Q13011 328 aa15.19■□□□□ 0.02
CLDN4-201ENST00000340958 PRR30Q53SZ7 412 aaPredicted RBP15.19■□□□□ 0.02
CLDN4-201ENST00000340958 HIST2H3PS2Q5TEC6 136 aa15.19■□□□□ 0.02
CLDN4-201ENST00000340958 TMEM244Q5VVB8 128 aa15.19■□□□□ 0.02
CLDN4-201ENST00000340958 TFAP2EQ6VUC0 442 aa15.19■□□□□ 0.02
CLDN4-201ENST00000340958 HIST2H3AQ71DI3 136 aa15.19■□□□□ 0.02
CLDN4-201ENST00000340958 IL17RDQ8NFM7 739 aa15.19■□□□□ 0.02
CLDN4-201ENST00000340958 OR1F12Q8NHA8 337 aa15.19■□□□□ 0.02
CLDN4-201ENST00000340958 AKR7LQ8NHP1 331 aa15.19■□□□□ 0.02
CLDN4-201ENST00000340958 AP3S1Q92572 193 aa15.19■□□□□ 0.02
CLDN4-201ENST00000340958 WACQ9BTA9 647 aa15.19■□□□□ 0.02
CLDN4-201ENST00000340958 OR2H1Q9GZK4 316 aa15.19■□□□□ 0.02
CLDN4-201ENST00000340958 PPIL3Q9H2H8 161 aaKnown RBP15.19■□□□□ 0.02
CLDN4-201ENST00000340958 TCF7L1Q9HCS4 588 aa15.19■□□□□ 0.02
CLDN4-201ENST00000340958 ASF1BQ9NVP2 202 aa15.19■□□□□ 0.02
CLDN4-201ENST00000340958 CRNNQ9UBG3 495 aaPredicted RBP15.19■□□□□ 0.02
CLDN4-201ENST00000340958 PROCRQ9UNN8 238 aa15.19■□□□□ 0.02
CLDN4-201ENST00000340958 MBD3L4A6NDZ8 208 aaPredicted RBP15.18■□□□□ 0.02
CLDN4-201ENST00000340958 MBD3L3A6NE82 208 aaPredicted RBP15.18■□□□□ 0.02
CLDN4-201ENST00000340958 MBD3L5A6NJ08 208 aaPredicted RBP15.18■□□□□ 0.02
CLDN4-201ENST00000340958 P2RY10O00398 339 aa15.18■□□□□ 0.02
CLDN4-201ENST00000340958 NCR1O76036 304 aa15.18■□□□□ 0.02
CLDN4-201ENST00000340958 HOXD4P09016 255 aaPredicted RBP15.18■□□□□ 0.02
CLDN4-201ENST00000340958 UCHL1P09936 223 aa15.18■□□□□ 0.02
CLDN4-201ENST00000340958 TMIGD3P0DMS9 266 aaPredicted RBP15.18■□□□□ 0.02
CLDN4-201ENST00000340958 KIR2DL2P43627 348 aaPredicted RBP15.18■□□□□ 0.02
CLDN4-201ENST00000340958 HTR5AP47898 357 aa15.18■□□□□ 0.02
CLDN4-201ENST00000340958 CAV3P56539 151 aa15.18■□□□□ 0.02
CLDN4-201ENST00000340958 PSG4Q00888 419 aa15.18■□□□□ 0.02
CLDN4-201ENST00000340958 GFOD2Q3B7J2 385 aa15.18■□□□□ 0.02
CLDN4-201ENST00000340958 VWA1Q6PCB0 445 aa15.18■□□□□ 0.02
CLDN4-201ENST00000340958 FAM57BQ71RH2 274 aa15.18■□□□□ 0.02
CLDN4-201ENST00000340958 TPRA1Q86W33 373 aa15.18■□□□□ 0.02
CLDN4-201ENST00000340958 OR51A4Q8NGJ6 313 aa15.18■□□□□ 0.02
CLDN4-201ENST00000340958 OR13C3Q8NGS6 347 aa15.18■□□□□ 0.02
CLDN4-201ENST00000340958 OR10AC1Q8NH08 325 aa15.18■□□□□ 0.02
CLDN4-201ENST00000340958 MBD3L2Q8NHZ7 208 aaPredicted RBP15.18■□□□□ 0.02
CLDN4-201ENST00000340958 TMEM106AQ96A25 262 aa15.18■□□□□ 0.02
CLDN4-201ENST00000340958 PGAM5Q96HS1 289 aa15.18■□□□□ 0.02
CLDN4-201ENST00000340958 DERL3Q96Q80 235 aa15.18■□□□□ 0.02
CLDN4-201ENST00000340958 HHLA2Q9UM44 414 aa15.18■□□□□ 0.02
CLDN4-201ENST00000340958 PMF1-BGLAPU3KQ54 211 aa15.18■□□□□ 0.02
CLDN4-201ENST00000340958 FASNP49327 2511 aaKnown RBP15.18■□□□□ 0.02
CLDN4-201ENST00000340958 NBASA2RRP1 2371 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 CIB4A0PJX0 185 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 RGS5O15539 181 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 TBX1O43435 398 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 HLA-HP01893 362 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 CD2P06729 351 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 TDGF1P3P51864 188 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 TPTEP56180 551 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 FOXF2Q12947 444 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 ANKRD16Q6P6B7 361 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 UNQ9370/PRO34162Q6UXP9 181 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 NANOS1Q8WY41 292 aaKnown RBP15.17■□□□□ 0.02
CLDN4-201ENST00000340958 SLC7A6Q92536 515 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 PPP1R14BQ96C90 147 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 CEP19Q96LK0 163 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 SLX1AQ9BQ83 275 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 TP63Q9H3D4 680 aaPredicted RBP15.17■□□□□ 0.02
CLDN4-201ENST00000340958 TRBV5-5A0A0J9YX44 114 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 A0A1B0GVI7 797 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 LOC107986453A0A1B0GWG9 222 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 M0R135 149 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 PDCD5O14737 125 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 PFDN1O60925 122 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 SRMP19623 302 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 RAB3BP20337 219 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 ACHEP22303 614 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 BMXP51813 675 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 EIF2S3LQ2VIR3 472 aaKnown RBP15.17■□□□□ 0.02
CLDN4-201ENST00000340958 PABPC1L2AQ5JQF8 200 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 RTL6Q6ICC9 239 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 TMEM53Q6P2H8 277 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 ELMOD2Q8IZ81 293 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 OR1K1Q8NGR3 316 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 FGFBP3Q8TAT2 258 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 ZNF799Q96GE5 643 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 DACH2Q96NX9 599 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 BARHL1Q9BZE3 327 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 CKLFQ9UBR5 152 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 NUFIP1Q9UHK0 495 aaKnown RBP15.17■□□□□ 0.02
CLDN4-201ENST00000340958 SH3BGRL2Q9UJC5 107 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 FAM215AQ9Y5M1 114 aa15.17■□□□□ 0.02
CLDN4-201ENST00000340958 SVILO95425 2214 aa15.16■□□□□ 0.02
CLDN4-201ENST00000340958 TRAV1-2A0A0B4J238 106 aa15.16■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms