RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 ACSM4P0C7M7 580 aa13.1□□□□□ -0.31
VAPA-201ENST00000340541 IGHV4-31P0DP07 118 aa13.1□□□□□ -0.31
VAPA-201ENST00000340541 ZNF823P16415 610 aa13.1□□□□□ -0.31
VAPA-201ENST00000340541 COL8A2P25067 703 aa13.1□□□□□ -0.31
VAPA-201ENST00000340541 FMO3P31513 532 aa13.1□□□□□ -0.31
VAPA-201ENST00000340541 RGS6P49758 472 aa13.1□□□□□ -0.31
VAPA-201ENST00000340541 ENTPD1P49961 510 aa13.1□□□□□ -0.31
VAPA-201ENST00000340541 ACTR3P61158 418 aa13.1□□□□□ -0.31
VAPA-201ENST00000340541 CCL8P80075 99 aa13.1□□□□□ -0.31
VAPA-201ENST00000340541 MRPS11P82912 194 aaKnown RBP13.1□□□□□ -0.31
VAPA-201ENST00000340541 ECH1Q13011 328 aa13.1□□□□□ -0.31
VAPA-201ENST00000340541 MOGQ16653 247 aa13.1□□□□□ -0.31
VAPA-201ENST00000340541 PCGF3Q3KNV8 242 aa13.1□□□□□ -0.31
VAPA-201ENST00000340541 TEX30Q5JUR7 227 aa13.1□□□□□ -0.31
VAPA-201ENST00000340541 TMEM236Q5W0B7 351 aa13.1□□□□□ -0.31
VAPA-201ENST00000340541 TMEM154Q6P9G4 183 aa13.1□□□□□ -0.31
VAPA-201ENST00000340541 ZNF540Q8NDQ6 660 aa13.1□□□□□ -0.31
VAPA-201ENST00000340541 SNX33Q8WV41 574 aa13.1□□□□□ -0.31
VAPA-201ENST00000340541 GABARAPL1Q9H0R8 117 aa13.1□□□□□ -0.31
VAPA-201ENST00000340541 MARCH7Q9H992 704 aa13.1□□□□□ -0.31
VAPA-201ENST00000340541 PAPOLBQ9NRJ5 636 aaKnown RBP13.1□□□□□ -0.31
VAPA-201ENST00000340541 DDX28Q9NUL7 540 aaKnown RBP13.1□□□□□ -0.31
VAPA-201ENST00000340541 G3V2T6 193 aa13.09□□□□□ -0.31
VAPA-201ENST00000340541 EBAG9O00559 213 aa13.09□□□□□ -0.31
VAPA-201ENST00000340541 MITFO75030 526 aaPredicted RBP13.09□□□□□ -0.31
VAPA-201ENST00000340541 FCGR1AP12314 374 aa13.09□□□□□ -0.31
VAPA-201ENST00000340541 KITLGP21583 273 aa13.09□□□□□ -0.31
VAPA-201ENST00000340541 OTX1P32242 354 aaPredicted RBP13.09□□□□□ -0.31
VAPA-201ENST00000340541 ZNF81P51508 661 aa13.09□□□□□ -0.31
VAPA-201ENST00000340541 CRISP1P54107 249 aa13.09□□□□□ -0.31
VAPA-201ENST00000340541 GGTLC2Q14390 218 aa13.09□□□□□ -0.31
VAPA-201ENST00000340541 PLBD1Q6P4A8 553 aa13.09□□□□□ -0.31
VAPA-201ENST00000340541 DCXRQ7Z4W1 244 aa13.09□□□□□ -0.31
VAPA-201ENST00000340541 NAA40Q86UY6 237 aa13.09□□□□□ -0.31
VAPA-201ENST00000340541 OR6K6Q8NGW6 343 aa13.09□□□□□ -0.31
VAPA-201ENST00000340541 ST7LQ8TDW4 575 aa13.09□□□□□ -0.31
VAPA-201ENST00000340541 RDH5Q92781 318 aa13.09□□□□□ -0.31
VAPA-201ENST00000340541 APOBEC3DQ96AK3 386 aaPredicted RBP13.09□□□□□ -0.31
VAPA-201ENST00000340541 HAVCR1Q96D42 359 aa13.09□□□□□ -0.31
VAPA-201ENST00000340541 CMBLQ96DG6 245 aa13.09□□□□□ -0.31
VAPA-201ENST00000340541 COG8Q96MW5 612 aa13.09□□□□□ -0.31
VAPA-201ENST00000340541 C1QTNF5Q9BXJ0 243 aa13.09□□□□□ -0.31
VAPA-201ENST00000340541 KIF17Q9P2E2 1029 aa13.09□□□□□ -0.31
VAPA-201ENST00000340541 PURGQ9UJV8 347 aaKnown RBP13.09□□□□□ -0.31
VAPA-201ENST00000340541 CUBNO60494 3623 aa13.09□□□□□ -0.31
VAPA-201ENST00000340541 F5H5K5 113 aa13.08□□□□□ -0.32
VAPA-201ENST00000340541 H3BNX3 289 aa13.08□□□□□ -0.32
VAPA-201ENST00000340541 ZNF593O00488 134 aaPredicted RBP13.08□□□□□ -0.32
VAPA-201ENST00000340541 LILRA1O75019 489 aa13.08□□□□□ -0.32
VAPA-201ENST00000340541 GLCEO94923 617 aa13.08□□□□□ -0.32
VAPA-201ENST00000340541 MT-ND5P03915 603 aa13.08□□□□□ -0.32
VAPA-201ENST00000340541 HMGN1P05114 100 aa13.08□□□□□ -0.32
VAPA-201ENST00000340541 SPARCP09486 303 aa13.08□□□□□ -0.32
VAPA-201ENST00000340541 TACSTD2P09758 323 aa13.08□□□□□ -0.32
VAPA-201ENST00000340541 RAC2P15153 192 aa13.08□□□□□ -0.32
VAPA-201ENST00000340541 ACHEP22303 614 aa13.08□□□□□ -0.32
VAPA-201ENST00000340541 ANOS1P23352 680 aa13.08□□□□□ -0.32
VAPA-201ENST00000340541 EPHA2P29317 976 aa13.08□□□□□ -0.32
VAPA-201ENST00000340541 BLVRAP53004 296 aa13.08□□□□□ -0.32
VAPA-201ENST00000340541 HLXQ14774 488 aaPredicted RBP13.08□□□□□ -0.32
VAPA-201ENST00000340541 KPNB1Q14974 876 aaKnown RBP13.08□□□□□ -0.32
VAPA-201ENST00000340541 SPRNQ5BIV9 151 aa13.08□□□□□ -0.32
VAPA-201ENST00000340541 KDM4DQ6B0I6 523 aa13.08□□□□□ -0.32
VAPA-201ENST00000340541 FAM166AQ6J272 317 aa13.08□□□□□ -0.32
VAPA-201ENST00000340541 FBXW12Q6X9E4 464 aa13.08□□□□□ -0.32
VAPA-201ENST00000340541 Q6ZR03 302 aa13.08□□□□□ -0.32
VAPA-201ENST00000340541 TIGD4Q8IY51 512 aa13.08□□□□□ -0.32
VAPA-201ENST00000340541 PYDC1Q8WXC3 89 aa13.08□□□□□ -0.32
VAPA-201ENST00000340541 CHODLQ9H9P2 273 aa13.08□□□□□ -0.32
VAPA-201ENST00000340541 MSL2Q9HCI7 577 aa13.08□□□□□ -0.32
VAPA-201ENST00000340541 CYSLTR2Q9NS75 346 aa13.08□□□□□ -0.32
VAPA-201ENST00000340541 PTTG3PQ9NZH4 202 aa13.08□□□□□ -0.32
VAPA-201ENST00000340541 CGGBP1Q9UFW8 167 aaPredicted RBP13.08□□□□□ -0.32
VAPA-201ENST00000340541 TMEFF2Q9UIK5 374 aaPredicted RBP13.08□□□□□ -0.32
VAPA-201ENST00000340541 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.08□□□□□ -0.326e-7■■■□□ 16.2
VAPA-201ENST00000340541 MALRD1Q5VYJ5 2156 aa13.08□□□□□ -0.32
VAPA-201ENST00000340541 PLSCR5A0PG75 271 aa13.07□□□□□ -0.32
VAPA-201ENST00000340541 PRR23D1E9PI22 279 aaPredicted RBP13.07□□□□□ -0.32
VAPA-201ENST00000340541 SPRY3O43610 288 aa13.07□□□□□ -0.32
VAPA-201ENST00000340541 TIMM8AO60220 97 aaPredicted RBP13.07□□□□□ -0.32
VAPA-201ENST00000340541 PRR23D2P0DMB1 279 aaPredicted RBP13.07□□□□□ -0.32
VAPA-201ENST00000340541 ZNF23P17027 643 aa13.07□□□□□ -0.32
VAPA-201ENST00000340541 PAICSP22234 425 aaKnown RBP13.07□□□□□ -0.32
VAPA-201ENST00000340541 SLC2A5P22732 501 aa13.07□□□□□ -0.32
VAPA-201ENST00000340541 GSTT1P30711 240 aa13.07□□□□□ -0.32
VAPA-201ENST00000340541 LIPAP38571 399 aa13.07□□□□□ -0.32
VAPA-201ENST00000340541 CRYBB2P43320 205 aa13.07□□□□□ -0.32
VAPA-201ENST00000340541 ESRRGP62508 458 aa13.07□□□□□ -0.32
VAPA-201ENST00000340541 CDK5R2Q13319 367 aa13.07□□□□□ -0.32
VAPA-201ENST00000340541 PTGES3Q15185 160 aaKnown RBP13.07□□□□□ -0.32
VAPA-201ENST00000340541 TRIP10Q15642 601 aa13.07□□□□□ -0.32
VAPA-201ENST00000340541 TSTQ16762 297 aaKnown RBP13.07□□□□□ -0.32
VAPA-201ENST00000340541 FAM209AQ5JX71 171 aa13.07□□□□□ -0.32
VAPA-201ENST00000340541 ZDHHC13Q8IUH4 622 aa13.07□□□□□ -0.32
VAPA-201ENST00000340541 CPOQ8IVL8 374 aa13.07□□□□□ -0.32
VAPA-201ENST00000340541 BBS1Q8NFJ9 593 aa13.07□□□□□ -0.32
VAPA-201ENST00000340541 OTULINQ96BN8 352 aa13.07□□□□□ -0.32
VAPA-201ENST00000340541 SLAMF6Q96DU3 332 aa13.07□□□□□ -0.32
VAPA-201ENST00000340541 CENPNQ96H22 339 aaPredicted RBP13.07□□□□□ -0.32
VAPA-201ENST00000340541 INTS14Q96SY0 518 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms