RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 TMEM174Q8WUU8 243 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 OR1E3Q8WZA6 343 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 ABHD6Q9BV23 337 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 SLC25A32Q9H2D1 315 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 HEYLQ9NQ87 328 aaPredicted RBP7.91□□□□□ -1.14
RTN3-202ENST00000339997 EXOSC3Q9NQT5 275 aaKnown RBP7.91□□□□□ -1.14
RTN3-202ENST00000339997 FGF21Q9NSA1 209 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 SUSD2Q9UGT4 822 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 FLVCR1Q9Y5Y0 555 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 SDK2Q58EX2 2172 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 TIAM2Q8IVF5 1701 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 PDGFBP01127 241 aaPredicted RBP7.91□□□□□ -1.14
RTN3-202ENST00000339997 TRAPPC2P0DI81 140 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 TRAPPC2BP0DI82 140 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 CD22P20273 847 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 ACKR3P25106 362 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 LAP3P28838 519 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 TPBGQ13641 420 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 GPNMBQ14956 572 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 CNN3Q15417 329 aaKnown RBP7.91□□□□□ -1.14
RTN3-202ENST00000339997 KCNIP4Q6PIL6 250 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 IL34Q6ZMJ4 242 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 C20orf196Q8IYI0 205 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 SLC37A2Q8TED4 501 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 FBXO17Q96EF6 278 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 DUS3LQ96G46 650 aaKnown RBP7.91□□□□□ -1.14
RTN3-202ENST00000339997 SIGLEC11Q96RL6 698 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 DAPP1Q9UN19 280 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 SCN3AQ9NY46 2000 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 CRYM-AS1A6NIL9 109 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 AQP7P3A6NL99 342 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 SHISA8B8ZZ34 492 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 GPR31O00270 319 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 CST5P28325 142 aaPredicted RBP7.91□□□□□ -1.14
RTN3-202ENST00000339997 MPGP29372 298 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 RPL12P30050 165 aaKnown RBP7.91□□□□□ -1.14
RTN3-202ENST00000339997 SDHAP31040 664 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 HOXA9P31269 272 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 RFC3P40938 356 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 DUSP3P51452 185 aaPredicted RBP7.91□□□□□ -1.14
RTN3-202ENST00000339997 RPS4XP62701 263 aaKnown RBP7.91□□□□□ -1.14
RTN3-202ENST00000339997 FLI1Q01543 452 aaPredicted RBP7.91□□□□□ -1.14
RTN3-202ENST00000339997 DUSP2Q05923 314 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 RPL18Q07020 188 aaKnown RBP7.91□□□□□ -1.14
RTN3-202ENST00000339997 CDK5R1Q15078 307 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 C9orf152Q5JTZ5 239 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 CBLN2Q8IUK8 224 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 MSI2Q96DH6 328 aaKnown RBP7.91□□□□□ -1.14
RTN3-202ENST00000339997 ST6GAL2Q96JF0 529 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 CXorf58Q96LI9 332 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 LINC00052Q96N35 136 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 ZNF230Q9UIE0 474 aaPredicted RBP7.91□□□□□ -1.14
RTN3-202ENST00000339997 CCDC88AQ3V6T2 1871 aa7.91□□□□□ -1.14
RTN3-202ENST00000339997 IGHV3-15A0A0B4J1V0 119 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 TRAV34A0A0B4J273 112 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 ZNF727A8MUV8 499 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 H7BYZ3 331 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 ST8SIA3O43173 380 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 HOXB3P14651 431 aaPredicted RBP7.9□□□□□ -1.14
RTN3-202ENST00000339997 ETV6P41212 452 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 NKX2-1P43699 371 aaPredicted RBP7.9□□□□□ -1.14
RTN3-202ENST00000339997 GABRA4P48169 554 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 C1orf140Q5VVS0 124 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 OR13H1Q8NG92 308 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 OR10D4PQ8NGN7 298 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 SMIM19Q96E16 107 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 ZNF75AQ96N20 296 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 GINS3Q9BRX5 216 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 TMPRSS13Q9BYE2 586 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 FOXQ1Q9C009 403 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 ZCCHC4Q9H5U6 513 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 C12orf49Q9H741 205 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 MSL2Q9HCI7 577 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 PISDQ9UG56 409 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 MOKQ9UQ07 419 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 PRAMEF26H0Y7S4 382 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 KCNAB3O43448 404 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 CD37P11049 281 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 RPL7P18124 248 aaKnown RBP7.9□□□□□ -1.14
RTN3-202ENST00000339997 CRYBB2P43320 205 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 UBE2G2P60604 165 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 B4GALNT1Q00973 533 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 ZNF528Q3MIS6 628 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 OR2T2Q6IF00 324 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 FAM199XQ6PEV8 388 aaPredicted RBP7.9□□□□□ -1.14
RTN3-202ENST00000339997 CD300LGQ6UXG3 332 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 ADIPOR2Q86V24 386 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 THNSL2Q86YJ6 484 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 KLHDC8BQ8IXV7 354 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 CLRN3Q8NCR9 226 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 VN1R2Q8NFZ6 395 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 NUBPLQ8TB37 319 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 TMEM37Q8WXS4 190 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 TSLPQ969D9 159 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 LCORQ96JN0 433 aaPredicted RBP7.9□□□□□ -1.14
RTN3-202ENST00000339997 VPS25Q9BRG1 176 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 ADAT1Q9BUB4 502 aaKnown RBP7.9□□□□□ -1.14
RTN3-202ENST00000339997 C6orf106Q9H6K1 298 aaPredicted RBP7.9□□□□□ -1.14
RTN3-202ENST00000339997 SLCO1C1Q9NYB5 712 aa7.9□□□□□ -1.14
RTN3-202ENST00000339997 RAB22AQ9UL26 194 aa7.9□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms