RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 OGFRL1Q5TC84 451 aaPredicted RBP13.62□□□□□ -0.23
CCDC28A-201ENST00000332797 MBNL2Q5VZF2 373 aaKnown RBP13.62□□□□□ -0.23
CCDC28A-201ENST00000332797 NAA40Q86UY6 237 aa13.62□□□□□ -0.23
CCDC28A-201ENST00000332797 KRTAP1-3Q8IUG1 177 aa13.62□□□□□ -0.23
CCDC28A-201ENST00000332797 ZCCHC24Q8N2G6 241 aaKnown RBP13.62□□□□□ -0.23
CCDC28A-201ENST00000332797 ZNF555Q8NEP9 628 aa13.62□□□□□ -0.23
CCDC28A-201ENST00000332797 RNF133Q8WVZ7 376 aa13.62□□□□□ -0.23
CCDC28A-201ENST00000332797 TRUB1Q8WWH5 349 aaKnown RBP13.62□□□□□ -0.23
CCDC28A-201ENST00000332797 APOBEC3DQ96AK3 386 aaPredicted RBP13.62□□□□□ -0.23
CCDC28A-201ENST00000332797 COG8Q96MW5 612 aa13.62□□□□□ -0.23
CCDC28A-201ENST00000332797 RDH12Q96NR8 316 aa13.62□□□□□ -0.23
CCDC28A-201ENST00000332797 SORCS2Q96PQ0 1159 aa13.62□□□□□ -0.23
CCDC28A-201ENST00000332797 YIPF3Q9GZM5 350 aa13.62□□□□□ -0.23
CCDC28A-201ENST00000332797 BARX1Q9HBU1 254 aaPredicted RBP13.62□□□□□ -0.23
CCDC28A-201ENST00000332797 FAM118AQ9NWS6 357 aa13.62□□□□□ -0.23
CCDC28A-201ENST00000332797 PTTG3PQ9NZH4 202 aa13.62□□□□□ -0.23
CCDC28A-201ENST00000332797 LAMP5Q9UJQ1 280 aa13.62□□□□□ -0.23
CCDC28A-201ENST00000332797 KLHDC2Q9Y2U9 406 aa13.62□□□□□ -0.23
CCDC28A-201ENST00000332797 VPS13CQ709C8 3753 aa13.62□□□□□ -0.23
CCDC28A-201ENST00000332797 USF3Q68DE3 2245 aa13.62□□□□□ -0.23
CCDC28A-201ENST00000332797 CREBBPQ92793 2442 aa13.62□□□□□ -0.23
CCDC28A-201ENST00000332797 RTTNQ86VV8 2226 aa13.62□□□□□ -0.23
CCDC28A-201ENST00000332797 H3BSA7 217 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 J3QW42 95 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 DLGAP1O14490 977 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 LCATP04180 440 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 HSD11B1P28845 292 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 HTR1FP30939 366 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 SLC15A1P46059 708 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 PRKXP51817 358 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 NUDT6P53370 316 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 GRB2P62993 217 aaKnown RBP13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 SLC34A1Q06495 639 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 SHEQ5VZ18 495 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 ZNF283Q8N7M2 679 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 WFDC11Q8NEX6 87 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 OR5L1Q8NGL2 311 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 RFKQ969G6 155 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 KCNJ15Q99712 375 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 C1QTNF5Q9BXJ0 243 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 TPK1Q9H3S4 243 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 SLCO1C1Q9NYB5 712 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 WARS2Q9UGM6 360 aaKnown RBP13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 RRP15Q9Y3B9 282 aaKnown RBP13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 SSX4O60224 188 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 IGHV3-13P01766 116 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 H2BFMP0C1H6 154 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 TUBG1P23258 451 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 OTX1P32242 354 aaPredicted RBP13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 OPRL1P41146 370 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 CX3CR1P49238 355 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 SNRPGP62308 76 aaKnown RBP13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 TMEM255AQ5JRV8 349 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 DRAM2Q6UX65 266 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 COLCA1Q6ZS62 124 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 SLC35F2Q8IXU6 374 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 OR51G2Q8NGK0 314 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 SNX33Q8WV41 574 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 CYGBQ8WWM9 190 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 TTTY10Q9BZA0 68 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 RAB1BQ9H0U4 201 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 RNPEPL1Q9HAU8 725 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 ADGRL4Q9HBW9 690 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 TUBG2Q9NRH3 451 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 AASSQ9UDR5 926 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 GPR160Q9UJ42 338 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 N6AMT1Q9Y5N5 214 aa13.61□□□□□ -0.23
CCDC28A-201ENST00000332797 PRRC2AP48634 2157 aaKnown RBP13.6□□□□□ -0.23
CCDC28A-201ENST00000332797 ARFGEF3Q5TH69 2177 aa13.6□□□□□ -0.23
CCDC28A-201ENST00000332797 SLC16A6O15403 523 aa13.6□□□□□ -0.23
CCDC28A-201ENST00000332797 TIMM8AO60220 97 aaPredicted RBP13.6□□□□□ -0.23
CCDC28A-201ENST00000332797 ENTPD6O75354 484 aa13.6□□□□□ -0.23
CCDC28A-201ENST00000332797 LY6HO94772 140 aa13.6□□□□□ -0.23
CCDC28A-201ENST00000332797 APOL3O95236 402 aa13.6□□□□□ -0.23
CCDC28A-201ENST00000332797 ERCC1P07992 297 aaPredicted RBP13.6□□□□□ -0.23
CCDC28A-201ENST00000332797 SLC2A1P11166 492 aa13.6□□□□□ -0.23
CCDC28A-201ENST00000332797 NAT2P11245 290 aa13.6□□□□□ -0.23
CCDC28A-201ENST00000332797 ALOX5APP20292 161 aa13.6□□□□□ -0.23
CCDC28A-201ENST00000332797 EFNA4P52798 201 aa13.6□□□□□ -0.23
CCDC28A-201ENST00000332797 PSG7Q13046 419 aa13.6□□□□□ -0.23
CCDC28A-201ENST00000332797 HLXQ14774 488 aaPredicted RBP13.6□□□□□ -0.23
CCDC28A-201ENST00000332797 MOGQ16653 247 aa13.6□□□□□ -0.23
CCDC28A-201ENST00000332797 LRRN1Q6UXK5 716 aa13.6□□□□□ -0.23
CCDC28A-201ENST00000332797 SPNS3Q6ZMD2 512 aa13.6□□□□□ -0.23
CCDC28A-201ENST00000332797 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.6□□□□□ -0.23
CCDC28A-201ENST00000332797 ENTHD1Q8IYW4 607 aa13.6□□□□□ -0.23
CCDC28A-201ENST00000332797 CMBLQ96DG6 245 aa13.6□□□□□ -0.23
CCDC28A-201ENST00000332797 Q96MF0 132 aa13.6□□□□□ -0.23
CCDC28A-201ENST00000332797 VCXQ9H320 206 aa13.6□□□□□ -0.23
CCDC28A-201ENST00000332797 MS4A5Q9H3V2 200 aa13.6□□□□□ -0.23
CCDC28A-201ENST00000332797 HAO2Q9NYQ3 351 aa13.6□□□□□ -0.23
CCDC28A-201ENST00000332797 COPS3Q9UNS2 423 aa13.6□□□□□ -0.23
CCDC28A-201ENST00000332797 TMEM14AQ9Y6G1 99 aa13.6□□□□□ -0.23
CCDC28A-201ENST00000332797 CELSR1Q9NYQ6 3014 aa13.59□□□□□ -0.23
CCDC28A-201ENST00000332797 ARID1AO14497 2285 aa13.59□□□□□ -0.23
CCDC28A-201ENST00000332797 ANXA2P07355 339 aaKnown RBP13.59□□□□□ -0.23
CCDC28A-201ENST00000332797 SBK2P0C263 348 aa13.59□□□□□ -0.23
CCDC28A-201ENST00000332797 ATP6V1E1P36543 226 aa13.59□□□□□ -0.23
CCDC28A-201ENST00000332797 POU4F2Q12837 409 aa13.59□□□□□ -0.23
CCDC28A-201ENST00000332797 MALLQ13021 153 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms