RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 TMIGD3P0DMS9 266 aaPredicted RBP8.82□□□□□ -1
HMGB3-201ENST00000325307 CELP19835 753 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 NPR2P20594 1047 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 PSMB10P40306 273 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 SSTP61278 116 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 MRPS34P82930 218 aaKnown RBP8.82□□□□□ -1
HMGB3-201ENST00000325307 FOXF2Q12947 444 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 ABHD12BQ7Z5M8 362 aaPredicted RBP8.82□□□□□ -1
HMGB3-201ENST00000325307 HIST2H2ABQ8IUE6 130 aaPredicted RBP8.82□□□□□ -1
HMGB3-201ENST00000325307 LIX1LQ8IVB5 337 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 UFD1Q92890 307 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 TMEM38BQ9NVV0 291 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 SLCO1C1Q9NYB5 712 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 GDF2Q9UK05 429 aaPredicted RBP8.82□□□□□ -1
HMGB3-201ENST00000325307 GTF2A1LQ9UNN4 478 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 PRR32B1ATL7 298 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 DVL2O14641 736 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 BET1O15155 118 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 FARS2O95363 451 aaKnown RBP8.82□□□□□ -1
HMGB3-201ENST00000325307 HOXD4P09016 255 aaPredicted RBP8.82□□□□□ -1
HMGB3-201ENST00000325307 EDN3P14138 238 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 OR3A2P47893 321 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 ZNF133P52736 654 aaPredicted RBP8.82□□□□□ -1
HMGB3-201ENST00000325307 ARF1P84077 181 aaKnown RBP8.82□□□□□ -1
HMGB3-201ENST00000325307 INSL4Q14641 139 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 TAF13Q15543 124 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 FBXW9Q5XUX1 488 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 VWA1Q6PCB0 445 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 CD200R1LQ6Q8B3 271 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 KLHL24Q6TFL4 600 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 DOLPP1Q86YN1 238 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 SYS1Q8N2H4 156 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 PARP16Q8N5Y8 322 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 OR52N5Q8NH56 324 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 TMEM203Q969S6 136 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 KCNS3Q9BQ31 491 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 C1orf198Q9H425 327 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 ELOVL3Q9HB03 270 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 GRIP1Q9Y3R0 1128 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 LHFPL6Q9Y693 200 aa8.82□□□□□ -1
HMGB3-201ENST00000325307 A0A096LPE4 126 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 A0A1W2PPZ6 126 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 MBD3L4A6NDZ8 208 aaPredicted RBP8.81□□□□□ -1
HMGB3-201ENST00000325307 MBD3L3A6NE82 208 aaPredicted RBP8.81□□□□□ -1
HMGB3-201ENST00000325307 MBD3L5A6NJ08 208 aaPredicted RBP8.81□□□□□ -1
HMGB3-201ENST00000325307 CTDSP2O14595 271 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 KIR2DL2P43627 348 aaPredicted RBP8.81□□□□□ -1
HMGB3-201ENST00000325307 CAPZA2P47755 286 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 FABP5Q01469 135 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 TPBGQ13641 420 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 TIMM50Q3ZCQ8 353 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 TEX30Q5JUR7 227 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 ATAD3CQ5T2N8 411 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 STEAP3Q658P3 488 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 OR7E24Q6IFN5 339 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 ARL9Q6T311 187 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 MBD3L2Q8NHZ7 208 aaPredicted RBP8.81□□□□□ -1
HMGB3-201ENST00000325307 WNT5BQ9H1J7 359 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 CYB5R1Q9UHQ9 305 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 MRM2Q9UI43 246 aaKnown RBP8.81□□□□□ -1
HMGB3-201ENST00000325307 FREM1Q5H8C1 2179 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 SPENQ96T58 3664 aaKnown RBP8.81□□□□□ -1
HMGB3-201ENST00000325307 ITPR1Q14643 2758 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 SHISA3A0PJX4 238 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 E9PI62 339 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 ATP6V1G2-DDX39BF2Z307 99 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 RER1O15258 196 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 ECDO95905 644 aaPredicted RBP8.81□□□□□ -1
HMGB3-201ENST00000325307 H2BFMP0C1H6 154 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 CLEC2LP0C7M8 214 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 CASP6P55212 293 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 FOXG1P55316 489 aaPredicted RBP8.81□□□□□ -1
HMGB3-201ENST00000325307 LSM6P62312 80 aaKnown RBP8.81□□□□□ -1
HMGB3-201ENST00000325307 EGR3Q06889 387 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 IKZF1Q13422 519 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 SEM1Q6ZVN7 128 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 SLC16A14Q7RTX9 510 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 CCDC190Q86UF4 302 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 CCDC28AQ8IWP9 274 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 SLC22A24Q8N4F4 322 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 OR6K3Q8NGY3 331 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 NABP1Q96AH0 204 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 PELI1Q96FA3 418 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 ST6GAL2Q96JF0 529 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 EXOSC4Q9NPD3 245 aaKnown RBP8.81□□□□□ -1
HMGB3-201ENST00000325307 PSMA1P25786 263 aaKnown RBP8.81□□□□□ -1
HMGB3-201ENST00000325307 RIDAP52758 137 aaKnown RBP8.81□□□□□ -1
HMGB3-201ENST00000325307 SLC3A1Q07837 685 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 PMPCAQ10713 525 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 KCNMB1Q16558 191 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 LIPNQ5VXI9 398 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 C22orf42Q6IC83 251 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 TFAP2EQ6VUC0 442 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 CFAP77Q6ZQR2 320 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 ZNF679Q8IYX0 411 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 GRPEL2Q8TAA5 225 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 SLAMF6Q96DU3 332 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 OR8B4Q96RC9 309 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 ISYNA1Q9NPH2 558 aa8.81□□□□□ -1
HMGB3-201ENST00000325307 PROCRQ9UNN8 238 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms