RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 ASTLQ6HA08 431 aaPredicted RBP10.47□□□□□ -0.73
VPS39-201ENST00000318006 KLHDC1Q8N7A1 406 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 NECAP1Q8NC96 275 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 OR13D1Q8NGV5 346 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 KIRREL1Q96J84 757 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 ENKD1Q9H0I2 346 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 DUSP22Q9NRW4 184 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 BTBD17A6NE02 478 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 NID1P14543 1247 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 RAB5AP20339 215 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 ELLP55199 621 aaPredicted RBP10.47□□□□□ -0.73
VPS39-201ENST00000318006 SSX1Q16384 188 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 GSG1Q2KHT4 349 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 BTNL8Q6UX41 500 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 MMP21Q8N119 569 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 OR5L1Q8NGL2 311 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 ZNF331Q9NQX6 463 aaPredicted RBP10.47□□□□□ -0.73
VPS39-201ENST00000318006 UTS2O95399 124 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 SMIM15Q7Z3B0 74 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 CPT1CQ8TCG5 803 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 EDAQ92838 391 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 PHYHIPLQ96FC7 376 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 LINC00615Q96LM1 132 aaPredicted RBP10.47□□□□□ -0.73
VPS39-201ENST00000318006 STACQ99469 402 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 PLAC1Q9HBJ0 212 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 BCL2L10Q9HD36 194 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 SIRT5Q9NXA8 310 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 V9GYS6 101 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 F6UZH7 168 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 HIST1H1CP16403 213 aaKnown RBP10.47□□□□□ -0.73
VPS39-201ENST00000318006 GALP22466 123 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 B4GALNT1Q00973 533 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 DUSP5Q16690 384 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 IQCJQ1A5X6 159 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 ELFN2Q5R3F8 820 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 FAM27D1Q5T7N8 215 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 MISPQ8IVT2 679 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 ZFP62Q8NB50 900 aaPredicted RBP10.47□□□□□ -0.73
VPS39-201ENST00000318006 DERL3Q96Q80 235 aa10.47□□□□□ -0.73
VPS39-201ENST00000318006 A0A087WV62 115 aa10.46□□□□□ -0.73
VPS39-201ENST00000318006 ASPDHA6ND91 283 aa10.46□□□□□ -0.73
VPS39-201ENST00000318006 CD79AP11912 226 aa10.46□□□□□ -0.73
VPS39-201ENST00000318006 HSD17B7P56937 341 aa10.46□□□□□ -0.73
VPS39-201ENST00000318006 DCDP81605 110 aaKnown RBP10.46□□□□□ -0.73
VPS39-201ENST00000318006 IKZF1Q13422 519 aa10.46□□□□□ -0.73
VPS39-201ENST00000318006 NKAIN2Q5VXU1 208 aa10.46□□□□□ -0.73
VPS39-201ENST00000318006 LCN15Q6UWW0 184 aa10.46□□□□□ -0.73
VPS39-201ENST00000318006 DCXRQ7Z4W1 244 aa10.46□□□□□ -0.73
VPS39-201ENST00000318006 ZNF683Q8IZ20 524 aa10.46□□□□□ -0.73
VPS39-201ENST00000318006 MED16Q9Y2X0 877 aa10.46□□□□□ -0.73
VPS39-201ENST00000318006 MAP1BP46821 2468 aaKnown RBP10.46□□□□□ -0.73
VPS39-201ENST00000318006 LOC107986453A0A1B0GWG9 222 aa10.46□□□□□ -0.73
VPS39-201ENST00000318006 ZNF98A6NK75 572 aa10.46□□□□□ -0.73
VPS39-201ENST00000318006 ZNF90Q03938 601 aa10.46□□□□□ -0.73
VPS39-201ENST00000318006 TRMT12Q53H54 448 aaKnown RBP10.46□□□□□ -0.73
VPS39-201ENST00000318006 BVESQ8NE79 360 aa10.46□□□□□ -0.73
VPS39-201ENST00000318006 SMIM7Q9BQ49 75 aa10.46□□□□□ -0.73
VPS39-201ENST00000318006 BANF2Q9H503 90 aa10.46□□□□□ -0.73
VPS39-201ENST00000318006 FKRPQ9H9S5 495 aa10.46□□□□□ -0.73
VPS39-201ENST00000318006 KCNG2Q9UJ96 466 aa10.46□□□□□ -0.73
VPS39-201ENST00000318006 C19orf53Q9UNZ5 99 aaPredicted RBP10.46□□□□□ -0.73
VPS39-201ENST00000318006 FAM96BQ9Y3D0 163 aa10.46□□□□□ -0.73
VPS39-201ENST00000318006 HMSDA8MTL9 139 aa10.46□□□□□ -0.74
VPS39-201ENST00000318006 G3V3Q6 166 aa10.46□□□□□ -0.74
VPS39-201ENST00000318006 GPR31O00270 319 aa10.46□□□□□ -0.74
VPS39-201ENST00000318006 WNT1P04628 370 aa10.46□□□□□ -0.74
VPS39-201ENST00000318006 IRF2P14316 349 aa10.46□□□□□ -0.74
VPS39-201ENST00000318006 HOXA1P49639 335 aaPredicted RBP10.46□□□□□ -0.74
VPS39-201ENST00000318006 TOMM34Q15785 309 aaPredicted RBP10.46□□□□□ -0.74
VPS39-201ENST00000318006 GUK1Q16774 197 aa10.46□□□□□ -0.74
VPS39-201ENST00000318006 C9orf62Q8N4C0 152 aa10.46□□□□□ -0.74
VPS39-201ENST00000318006 MARCH1Q8TCQ1 289 aa10.46□□□□□ -0.74
VPS39-201ENST00000318006 LAMP3Q9UQV4 416 aa10.46□□□□□ -0.74
VPS39-201ENST00000318006 SCN1AP35498 2009 aa10.46□□□□□ -0.74
VPS39-201ENST00000318006 HSPB2A8KAH6 182 aa10.46□□□□□ -0.74
VPS39-201ENST00000318006 ETHE1O95571 254 aa10.46□□□□□ -0.74
VPS39-201ENST00000318006 EEF1A1P68104 462 aaKnown RBP10.46□□□□□ -0.74
VPS39-201ENST00000318006 HSPB2Q16082 182 aa10.46□□□□□ -0.74
VPS39-201ENST00000318006 ANKRD16Q6P6B7 361 aa10.46□□□□□ -0.74
VPS39-201ENST00000318006 LILRA6Q6PI73 481 aa10.46□□□□□ -0.74
VPS39-201ENST00000318006 STPG2Q8N412 459 aa10.46□□□□□ -0.74
VPS39-201ENST00000318006 TMEM229BQ8NBD8 167 aa10.46□□□□□ -0.74
VPS39-201ENST00000318006 HSD17B8Q92506 261 aa10.46□□□□□ -0.74
VPS39-201ENST00000318006 OR6C1Q96RD1 312 aa10.46□□□□□ -0.74
VPS39-201ENST00000318006 ZNF2Q9BSG1 426 aaPredicted RBP10.46□□□□□ -0.74
VPS39-201ENST00000318006 TRAPPC2LQ9UL33 140 aa10.46□□□□□ -0.74
VPS39-201ENST00000318006 TMED7-TICAM2A0A0A6YYA0 188 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 LRP3O75074 770 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 TOX4O94842 621 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 DVL1P1P54792 670 aaPredicted RBP10.45□□□□□ -0.74
VPS39-201ENST00000318006 GABREP78334 506 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 MPPED2Q15777 294 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 NCR3LG1Q68D85 454 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 NUDCD2Q8WVJ2 157 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 WWTR1Q9GZV5 400 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 MCTS1Q9ULC4 181 aaKnown RBP10.45□□□□□ -0.74
VPS39-201ENST00000318006 TMED7Q9Y3B3 224 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 OR51B4Q9Y5P0 310 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 FLVCR1Q9Y5Y0 555 aa10.45□□□□□ -0.74
VPS39-201ENST00000318006 A0A1W2PPQ1 181 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms