RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 ADCK1Q86TW2 530 aa12.3□□□□□ -0.44
CCDC88B-201ENST00000301897 GJC3Q8NFK1 279 aa12.3□□□□□ -0.44
CCDC88B-201ENST00000301897 OR13C2Q8NGS9 318 aa12.3□□□□□ -0.44
CCDC88B-201ENST00000301897 GATAD2BQ8WXI9 593 aa12.3□□□□□ -0.44
CCDC88B-201ENST00000301897 SLC7A6Q92536 515 aa12.3□□□□□ -0.44
CCDC88B-201ENST00000301897 Q96M85 177 aa12.3□□□□□ -0.44
CCDC88B-201ENST00000301897 ZNF583Q96ND8 569 aa12.3□□□□□ -0.44
CCDC88B-201ENST00000301897 COQ7Q99807 217 aa12.3□□□□□ -0.44
CCDC88B-201ENST00000301897 TRIM15Q9C019 465 aa12.3□□□□□ -0.44
CCDC88B-201ENST00000301897 TRIM36Q9NQ86 728 aa12.3□□□□□ -0.44
CCDC88B-201ENST00000301897 INTS9Q9NV88 658 aaKnown RBP12.3□□□□□ -0.44
CCDC88B-201ENST00000301897 TMEM5Q9Y2B1 443 aa12.3□□□□□ -0.44
CCDC88B-201ENST00000301897 ADAM18Q9Y3Q7 739 aa12.3□□□□□ -0.44
CCDC88B-201ENST00000301897 RNF114Q9Y508 228 aa12.3□□□□□ -0.44
CCDC88B-201ENST00000301897 FAM220BPB1ANY3 271 aa12.29□□□□□ -0.44
CCDC88B-201ENST00000301897 ZNF879B4DU55 563 aa12.29□□□□□ -0.44
CCDC88B-201ENST00000301897 F5H5P2 479 aa12.29□□□□□ -0.44
CCDC88B-201ENST00000301897 FXYD1O00168 92 aa12.29□□□□□ -0.44
CCDC88B-201ENST00000301897 MLNRO43193 412 aa12.29□□□□□ -0.44
CCDC88B-201ENST00000301897 SLC16A7O60669 478 aa12.29□□□□□ -0.44
CCDC88B-201ENST00000301897 CFHR2P36980 270 aa12.29□□□□□ -0.44
CCDC88B-201ENST00000301897 RELBQ01201 579 aa12.29□□□□□ -0.44
CCDC88B-201ENST00000301897 SRSF4Q08170 494 aaKnown RBP12.29□□□□□ -0.44
CCDC88B-201ENST00000301897 KRR1Q13601 381 aaKnown RBP12.29□□□□□ -0.44
CCDC88B-201ENST00000301897 KCNMB1Q16558 191 aa12.29□□□□□ -0.44
CCDC88B-201ENST00000301897 TAF9Q16594 264 aa12.29□□□□□ -0.44
CCDC88B-201ENST00000301897 C11orf91Q3C1V1 193 aa12.29□□□□□ -0.44
CCDC88B-201ENST00000301897 ZNF841Q6ZN19 808 aa12.29□□□□□ -0.44
CCDC88B-201ENST00000301897 TMPRSS11FQ6ZWK6 438 aa12.29□□□□□ -0.44
CCDC88B-201ENST00000301897 MBOAT2Q6ZWT7 520 aa12.29□□□□□ -0.44
CCDC88B-201ENST00000301897 RHOUQ7L0Q8 258 aa12.29□□□□□ -0.44
CCDC88B-201ENST00000301897 FAM122BQ7Z309 247 aa12.29□□□□□ -0.44
CCDC88B-201ENST00000301897 PNLDC1Q8NA58 520 aaKnown RBP12.29□□□□□ -0.44
CCDC88B-201ENST00000301897 BHLHE23Q8NDY6 225 aa12.29□□□□□ -0.44
CCDC88B-201ENST00000301897 RBM4BQ9BQ04 359 aaKnown RBP12.29□□□□□ -0.44
CCDC88B-201ENST00000301897 PCGF1Q9BSM1 259 aa12.29□□□□□ -0.44
CCDC88B-201ENST00000301897 CDADC1Q9BWV3 514 aa12.29□□□□□ -0.44
CCDC88B-201ENST00000301897 NMNAT1Q9HAN9 279 aaPredicted RBP12.29□□□□□ -0.44
CCDC88B-201ENST00000301897 TNFRSF19Q9NS68 423 aa12.29□□□□□ -0.44
CCDC88B-201ENST00000301897 GID8Q9NWU2 228 aa12.29□□□□□ -0.44
CCDC88B-201ENST00000301897 VSX1Q9NZR4 365 aaPredicted RBP12.29□□□□□ -0.44
CCDC88B-201ENST00000301897 ERVK-18Q9QC07 812 aa12.29□□□□□ -0.44
CCDC88B-201ENST00000301897 AP3M1Q9Y2T2 418 aa12.29□□□□□ -0.44
CCDC88B-201ENST00000301897 H0YL77 283 aa12.28□□□□□ -0.44
CCDC88B-201ENST00000301897 RER1O15258 196 aa12.28□□□□□ -0.44
CCDC88B-201ENST00000301897 NDUFA2O43678 99 aa12.28□□□□□ -0.44
CCDC88B-201ENST00000301897 TOX4O94842 621 aa12.28□□□□□ -0.44
CCDC88B-201ENST00000301897 NDUFB2O95178 105 aa12.28□□□□□ -0.44
CCDC88B-201ENST00000301897 DBHP09172 617 aa12.28□□□□□ -0.44
CCDC88B-201ENST00000301897 SDHAP31040 664 aa12.28□□□□□ -0.44
CCDC88B-201ENST00000301897 PSMB10P40306 273 aa12.28□□□□□ -0.44
CCDC88B-201ENST00000301897 CD200P41217 278 aa12.28□□□□□ -0.44
CCDC88B-201ENST00000301897 MAPRE2Q15555 327 aa12.28□□□□□ -0.44
CCDC88B-201ENST00000301897 METTL11BQ5VVY1 283 aa12.28□□□□□ -0.44
CCDC88B-201ENST00000301897 DNM1P34Q6PK57 102 aa12.28□□□□□ -0.44
CCDC88B-201ENST00000301897 OR2T12Q8NG77 320 aa12.28□□□□□ -0.44
CCDC88B-201ENST00000301897 TECTBQ96PL2 329 aa12.28□□□□□ -0.44
CCDC88B-201ENST00000301897 PKP2Q99959 881 aa12.28□□□□□ -0.44
CCDC88B-201ENST00000301897 SLC22A4Q9H015 551 aa12.28□□□□□ -0.44
CCDC88B-201ENST00000301897 SYT4Q9H2B2 425 aa12.28□□□□□ -0.44
CCDC88B-201ENST00000301897 ANKRD19PQ9H560 264 aa12.28□□□□□ -0.44
CCDC88B-201ENST00000301897 RERGLQ9H628 205 aa12.28□□□□□ -0.44
CCDC88B-201ENST00000301897 ACOXLQ9NUZ1 547 aa12.28□□□□□ -0.44
CCDC88B-201ENST00000301897 COA3Q9Y2R0 106 aaPredicted RBP12.28□□□□□ -0.44
CCDC88B-201ENST00000301897 A0A087WUU8 490 aa12.27□□□□□ -0.45
CCDC88B-201ENST00000301897 A0A0G2JND7 137 aa12.27□□□□□ -0.45
CCDC88B-201ENST00000301897 ELOVL7A1L3X0 281 aa12.27□□□□□ -0.45
CCDC88B-201ENST00000301897 SLC22A31A6NKX4 558 aa12.27□□□□□ -0.45
CCDC88B-201ENST00000301897 C22orf46C9J442 243 aa12.27□□□□□ -0.45
CCDC88B-201ENST00000301897 CDC42EP2O14613 210 aa12.27□□□□□ -0.45
CCDC88B-201ENST00000301897 MRASO14807 208 aa12.27□□□□□ -0.45
CCDC88B-201ENST00000301897 EDF1O60869 148 aaKnown RBP12.27□□□□□ -0.45
CCDC88B-201ENST00000301897 CLPXO76031 633 aa12.27□□□□□ -0.45
CCDC88B-201ENST00000301897 CRABP1P29762 137 aa12.27□□□□□ -0.45
CCDC88B-201ENST00000301897 PMELP40967 661 aa12.27□□□□□ -0.45
CCDC88B-201ENST00000301897 GPR4P46093 362 aa12.27□□□□□ -0.45
CCDC88B-201ENST00000301897 HIST1H3AP68431 136 aa12.27□□□□□ -0.45
CCDC88B-201ENST00000301897 ECH1Q13011 328 aa12.27□□□□□ -0.45
CCDC88B-201ENST00000301897 MALLQ13021 153 aa12.27□□□□□ -0.45
CCDC88B-201ENST00000301897 FAM201AQ5SY85 155 aa12.27□□□□□ -0.45
CCDC88B-201ENST00000301897 HIST2H3PS2Q5TEC6 136 aa12.27□□□□□ -0.45
CCDC88B-201ENST00000301897 ASPHD2Q6ICH7 369 aa12.27□□□□□ -0.45
CCDC88B-201ENST00000301897 COLCA1Q6ZS62 124 aa12.27□□□□□ -0.45
CCDC88B-201ENST00000301897 HIST2H3AQ71DI3 136 aa12.27□□□□□ -0.45
CCDC88B-201ENST00000301897 PLPP7Q8NBV4 271 aa12.27□□□□□ -0.45
CCDC88B-201ENST00000301897 LRTOMTQ8WZ04 291 aa12.27□□□□□ -0.45
CCDC88B-201ENST00000301897 WDFY2Q96P53 400 aa12.27□□□□□ -0.45
CCDC88B-201ENST00000301897 GPX7Q96SL4 187 aaPredicted RBP12.27□□□□□ -0.45
CCDC88B-201ENST00000301897 DPAGT1Q9H3H5 408 aa12.27□□□□□ -0.45
CCDC88B-201ENST00000301897 MMADHCQ9H3L0 296 aaPredicted RBP12.27□□□□□ -0.45
CCDC88B-201ENST00000301897 FN3KRPQ9HA64 309 aa12.27□□□□□ -0.45
CCDC88B-201ENST00000301897 TCF7L1Q9HCS4 588 aa12.27□□□□□ -0.45
CCDC88B-201ENST00000301897 IGHV3-64DA0A0J9YX35 117 aa12.26□□□□□ -0.45
CCDC88B-201ENST00000301897 CENPVL3A0A0U1RRI6 287 aa12.26□□□□□ -0.45
CCDC88B-201ENST00000301897 FAM20BO75063 409 aa12.26□□□□□ -0.45
CCDC88B-201ENST00000301897 SFTPBP07988 381 aa12.26□□□□□ -0.45
CCDC88B-201ENST00000301897 MMP9P14780 707 aa12.26□□□□□ -0.45
CCDC88B-201ENST00000301897 FUT4P22083 530 aa12.26□□□□□ -0.45
CCDC88B-201ENST00000301897 YAP1P46937 504 aaKnown RBP12.26□□□□□ -0.45
CCDC88B-201ENST00000301897 RAD23AP54725 363 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms