RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 NOSIPQ9Y314 301 aaKnown RBP5.85□□□□□ -1.47
VPS35-201ENST00000299138 ERI3O43414 337 aaKnown RBP5.85□□□□□ -1.47
VPS35-201ENST00000299138 BCL2L11O43521 198 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 HEXAP06865 529 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 MPZP25189 248 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 WASP42768 502 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 TM4SF4P48230 202 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 HBG1P69891 147 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 HBG2P69892 147 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 ENDOGQ14249 297 aaKnown RBP5.85□□□□□ -1.47
VPS35-201ENST00000299138 EOGTQ5NDL2 527 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 ZNF66Q6ZN08 573 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 ABI3BPQ7Z7G0 1075 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 OR4K13Q8NH42 304 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 ABHD6Q9BV23 337 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 ULBP3Q9BZM4 244 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 ZNF552Q9H707 407 aaPredicted RBP5.85□□□□□ -1.47
VPS35-201ENST00000299138 ZFP64Q9NPA5 681 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 NPDC1Q9NQX5 325 aaPredicted RBP5.85□□□□□ -1.47
VPS35-201ENST00000299138 PLSCR3Q9NRY6 295 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 C1orf123Q9NWV4 160 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 MTFP1Q9UDX5 166 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 IL36AQ9UHA7 158 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 K7EQM0 130 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 B4GALT2O60909 372 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 HMGN2P05204 90 aaKnown RBP5.85□□□□□ -1.47
VPS35-201ENST00000299138 SNTB1Q13884 538 aaKnown RBP5.85□□□□□ -1.47
VPS35-201ENST00000299138 COL9A2Q14055 689 aaPredicted RBP5.85□□□□□ -1.47
VPS35-201ENST00000299138 CRMP1Q14194 572 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 GABRA6Q16445 453 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 AADACL3Q5VUY0 350 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 KLHDC9Q8NEP7 349 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 NUP43Q8NFH3 380 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 MCHR2Q969V1 340 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 SERINC2Q96SA4 455 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 TDP1Q9NUW8 608 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 SERTAD3Q9UJW9 196 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 PADI1Q9ULC6 663 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 TMEM210A6NLX4 147 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 KLF4O43474 513 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 SPINK4O60575 86 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 APBB3O95704 486 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 CD160O95971 181 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 CHRM2P08172 466 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 HOXD4P09016 255 aaPredicted RBP5.85□□□□□ -1.47
VPS35-201ENST00000299138 CCL23P55773 120 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 GPM6BQ13491 265 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 NCMAPQ5T1S8 102 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 OR2G6Q5TZ20 316 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 SLC18B1Q6NT16 456 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 Q6ZVL8 140 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 GPR32P1Q8NGA4 272 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 APH1AQ96BI3 265 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 MMABQ96EY8 250 aaPredicted RBP5.85□□□□□ -1.47
VPS35-201ENST00000299138 TEAD3Q99594 435 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 ZFYVE21Q9BQ24 234 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 LYRM4Q9HD34 91 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 TAAR2Q9P1P5 351 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 PRODH2Q9UF12 536 aa5.85□□□□□ -1.47
VPS35-201ENST00000299138 PRAMEF27A3QJZ7 478 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 AP4M1O00189 453 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 CCSO14618 274 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 RHBDL1O75783 438 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 NMBP08949 121 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 H2AFB1P0C5Y9 115 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 GNSP15586 552 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 ZNF43P17038 809 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 SRSF4Q08170 494 aaKnown RBP5.84□□□□□ -1.47
VPS35-201ENST00000299138 MFGE8Q08431 387 aaPredicted RBP5.84□□□□□ -1.47
VPS35-201ENST00000299138 IHHQ14623 411 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 SLC22A6Q4U2R8 563 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 FAM209BQ5JX69 171 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 PRAMEF9Q5VWM5 478 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 ANKRD34AQ69YU3 496 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 TMEM81Q6P7N7 255 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 OR2AK2Q8NG84 335 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 LILRB1Q8NHL6 650 aaPredicted RBP5.84□□□□□ -1.47
VPS35-201ENST00000299138 UBE2FQ969M7 185 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 C2orf42Q9NWW7 574 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 KCNG2Q9UJ96 466 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 YBX2Q9Y2T7 364 aaKnown RBP5.84□□□□□ -1.47
VPS35-201ENST00000299138 M0QZK8 103 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 TP53I11O14683 189 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 GGCTO75223 188 aaKnown RBP5.84□□□□□ -1.47
VPS35-201ENST00000299138 CTSSP25774 331 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 TACR3P29371 465 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 SURF2Q15527 256 aaPredicted RBP5.84□□□□□ -1.47
VPS35-201ENST00000299138 FAM182AQ5T1J6 154 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 RGS7BPQ6MZT1 257 aaPredicted RBP5.84□□□□□ -1.47
VPS35-201ENST00000299138 LCN15Q6UWW0 184 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 UNQ9370/PRO34162Q6UXP9 181 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 OR9K2Q8NGE7 335 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 FGGYQ96C11 551 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 HDAC8Q9BY41 377 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 NARFLQ9H6Q4 476 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 Q9N2J8 555 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 RASL12Q9NYN1 266 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 C19orf53Q9UNZ5 99 aaPredicted RBP5.84□□□□□ -1.47
VPS35-201ENST00000299138 WASHC3Q9Y3C0 194 aa5.84□□□□□ -1.47
VPS35-201ENST00000299138 A0A1W2PQ45 241 aaPredicted RBP5.84□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms