RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 LRRTM1Q86UE6 522 aa14.49□□□□□ -0.09
USP4-201ENST00000265560 OR8B12Q8NGG6 310 aa14.49□□□□□ -0.09
USP4-201ENST00000265560 FOXB1Q99853 325 aa14.49□□□□□ -0.09
USP4-201ENST00000265560 COL6A6A6NMZ7 2263 aa14.49□□□□□ -0.09
USP4-201ENST00000265560 ARHGAP21Q5T5U3 1957 aa14.49□□□□□ -0.09
USP4-201ENST00000265560 LINC01387J3KSC0 135 aa14.48□□□□□ -0.09
USP4-201ENST00000265560 PTHLHP12272 177 aa14.48□□□□□ -0.09
USP4-201ENST00000265560 ABOP16442 354 aa14.48□□□□□ -0.09
USP4-201ENST00000265560 ZNF32P17041 273 aa14.48□□□□□ -0.09
USP4-201ENST00000265560 IGFL2Q6UWQ7 119 aa14.48□□□□□ -0.09
USP4-201ENST00000265560 ZNF813Q6ZN06 617 aa14.48□□□□□ -0.09
USP4-201ENST00000265560 RNF144BQ7Z419 303 aa14.48□□□□□ -0.09
USP4-201ENST00000265560 SKA3Q8IX90 412 aa14.48□□□□□ -0.09
USP4-201ENST00000265560 ZFP3Q96NJ6 502 aa14.48□□□□□ -0.09
USP4-201ENST00000265560 WDFY2Q96P53 400 aa14.48□□□□□ -0.09
USP4-201ENST00000265560 TMEM38BQ9NVV0 291 aa14.48□□□□□ -0.09
USP4-201ENST00000265560 PRSS50Q9UI38 385 aa14.48□□□□□ -0.09
USP4-201ENST00000265560 HHLA2Q9UM44 414 aa14.48□□□□□ -0.09
USP4-201ENST00000265560 A0A1W2PQ09 198 aa14.48□□□□□ -0.09
USP4-201ENST00000265560 SYT7O43581 403 aa14.48□□□□□ -0.09
USP4-201ENST00000265560 OCMP0CE72 109 aaPredicted RBP14.48□□□□□ -0.09
USP4-201ENST00000265560 MMP16P51512 607 aa14.48□□□□□ -0.09
USP4-201ENST00000265560 CCDC92Q53HC0 331 aaPredicted RBP14.48□□□□□ -0.09
USP4-201ENST00000265560 SLCO5A1Q9H2Y9 848 aa14.48□□□□□ -0.09
USP4-201ENST00000265560 TRBV5-7A0A0A0MS05 114 aa14.48□□□□□ -0.09
USP4-201ENST00000265560 CCL2P13500 99 aa14.48□□□□□ -0.09
USP4-201ENST00000265560 MRPL28Q13084 256 aaKnown RBP14.48□□□□□ -0.09
USP4-201ENST00000265560 CARTPTQ16568 116 aa14.48□□□□□ -0.09
USP4-201ENST00000265560 C3P1Q6ZMU1 363 aa14.48□□□□□ -0.09
USP4-201ENST00000265560 ZADH2Q8N4Q0 377 aa14.48□□□□□ -0.09
USP4-201ENST00000265560 GJC3Q8NFK1 279 aa14.48□□□□□ -0.09
USP4-201ENST00000265560 ADAT3Q96EY9 351 aaPredicted RBP14.48□□□□□ -0.09
USP4-201ENST00000265560 SLITRK2Q9H156 845 aa14.48□□□□□ -0.09
USP4-201ENST00000265560 GPR84Q9NQS5 396 aa14.48□□□□□ -0.09
USP4-201ENST00000265560 ZNF71Q9NQZ8 489 aaPredicted RBP14.48□□□□□ -0.09
USP4-201ENST00000265560 RCE1Q9Y256 329 aa14.48□□□□□ -0.09
USP4-201ENST00000265560 ICE1Q9Y2F5 2266 aa14.47□□□□□ -0.09
USP4-201ENST00000265560 SLC22A20A6NK97 555 aa14.47□□□□□ -0.09
USP4-201ENST00000265560 IL7P13232 177 aa14.47□□□□□ -0.09
USP4-201ENST00000265560 SDHBP21912 280 aa14.47□□□□□ -0.09
USP4-201ENST00000265560 ARF1P84077 181 aaKnown RBP14.47□□□□□ -0.09
USP4-201ENST00000265560 ASB18Q6ZVZ8 466 aa14.47□□□□□ -0.09
USP4-201ENST00000265560 PRSS45Q7RTY3 260 aa14.47□□□□□ -0.09
USP4-201ENST00000265560 SPACA3Q8IXA5 215 aa14.47□□□□□ -0.09
USP4-201ENST00000265560 EXTL1Q92935 676 aa14.47□□□□□ -0.09
USP4-201ENST00000265560 PALMDQ9NP74 551 aa14.47□□□□□ -0.09
USP4-201ENST00000265560 RYDENQ9NUL5 291 aaKnown RBP14.47□□□□□ -0.09
USP4-201ENST00000265560 ACTL6AO96019 429 aa14.47□□□□□ -0.09
USP4-201ENST00000265560 CSF3P09919 207 aa14.47□□□□□ -0.09
USP4-201ENST00000265560 TMIGD3P0DMS9 266 aaPredicted RBP14.47□□□□□ -0.09
USP4-201ENST00000265560 MAPK3P27361 379 aaPredicted RBP14.47□□□□□ -0.09
USP4-201ENST00000265560 KCNMB1Q16558 191 aa14.47□□□□□ -0.09
USP4-201ENST00000265560 DEGS2Q6QHC5 323 aa14.47□□□□□ -0.09
USP4-201ENST00000265560 Q8N402 240 aa14.47□□□□□ -0.09
USP4-201ENST00000265560 SLC22A24Q8N4F4 322 aa14.47□□□□□ -0.09
USP4-201ENST00000265560 OR2AE1Q8NHA4 323 aa14.47□□□□□ -0.09
USP4-201ENST00000265560 TRIB1Q96RU8 372 aa14.47□□□□□ -0.09
USP4-201ENST00000265560 HLA-HP01893 362 aa14.46□□□□□ -0.09
USP4-201ENST00000265560 ITGA5P08648 1049 aa14.46□□□□□ -0.09
USP4-201ENST00000265560 NR2C1P13056 603 aa14.46□□□□□ -0.09
USP4-201ENST00000265560 CCNOP22674 350 aa14.46□□□□□ -0.09
USP4-201ENST00000265560 LSM6P62312 80 aaKnown RBP14.46□□□□□ -0.09
USP4-201ENST00000265560 MRPS34P82930 218 aaKnown RBP14.46□□□□□ -0.09
USP4-201ENST00000265560 FAM27BQ5VT28 67 aa14.46□□□□□ -0.09
USP4-201ENST00000265560 SLC16A14Q7RTX9 510 aa14.46□□□□□ -0.09
USP4-201ENST00000265560 ZNF100Q8IYN0 542 aa14.46□□□□□ -0.09
USP4-201ENST00000265560 OR51D1Q8NGF3 324 aa14.46□□□□□ -0.09
USP4-201ENST00000265560 SNRNP27Q8WVK2 155 aaKnown RBP14.46□□□□□ -0.09
USP4-201ENST00000265560 ABHD1Q96SE0 405 aa14.46□□□□□ -0.09
USP4-201ENST00000265560 B3GNT3Q9Y2A9 372 aa14.46□□□□□ -0.09
USP4-201ENST00000265560 CADP27708 2225 aa14.46□□□□□ -0.09
USP4-201ENST00000265560 YES1P07947 543 aa14.46□□□□□ -0.09
USP4-201ENST00000265560 PSMA6P60900 246 aaKnown RBP14.46□□□□□ -0.09
USP4-201ENST00000265560 HGFACQ04756 655 aa14.46□□□□□ -0.09
USP4-201ENST00000265560 ZNF544Q6NX49 715 aa14.46□□□□□ -0.09
USP4-201ENST00000265560 ELMOD2Q8IZ81 293 aa14.46□□□□□ -0.09
USP4-201ENST00000265560 UPB1Q9UBR1 384 aa14.46□□□□□ -0.09
USP4-201ENST00000265560 ZNF503-AS2A6NEH8 195 aa14.46□□□□□ -0.1
USP4-201ENST00000265560 SGCEO43556 437 aa14.46□□□□□ -0.1
USP4-201ENST00000265560 LANCL1O43813 399 aa14.46□□□□□ -0.1
USP4-201ENST00000265560 CEACAM4O75871 244 aa14.46□□□□□ -0.1
USP4-201ENST00000265560 CD2P06729 351 aa14.46□□□□□ -0.1
USP4-201ENST00000265560 SNAI3Q3KNW1 292 aa14.46□□□□□ -0.1
USP4-201ENST00000265560 ELFN2Q5R3F8 820 aa14.46□□□□□ -0.1
USP4-201ENST00000265560 OR10K2Q6IF99 312 aa14.46□□□□□ -0.1
USP4-201ENST00000265560 Q6ZNX1 250 aa14.46□□□□□ -0.1
USP4-201ENST00000265560 OR1J2Q8NGS2 313 aa14.46□□□□□ -0.1
USP4-201ENST00000265560 NPRL2Q8WTW4 380 aa14.46□□□□□ -0.1
USP4-201ENST00000265560 CHPT1Q8WUD6 406 aa14.46□□□□□ -0.1
USP4-201ENST00000265560 INTS12Q96CB8 462 aaKnown RBP14.46□□□□□ -0.1
USP4-201ENST00000265560 PPP1R3EQ9H7J1 279 aa14.46□□□□□ -0.1
USP4-201ENST00000265560 TBC1D24Q9ULP9 559 aa14.46□□□□□ -0.1
USP4-201ENST00000265560 ROS1P08922 2347 aa14.45□□□□□ -0.1
USP4-201ENST00000265560 A0A1W2PR80 420 aa14.45□□□□□ -0.1
USP4-201ENST00000265560 AIPO00170 330 aa14.45□□□□□ -0.1
USP4-201ENST00000265560 FCER2P06734 321 aa14.45□□□□□ -0.1
USP4-201ENST00000265560 PSG4Q00888 419 aa14.45□□□□□ -0.1
USP4-201ENST00000265560 ZNF169Q14929 603 aaPredicted RBP14.45□□□□□ -0.1
USP4-201ENST00000265560 P4HA3Q7Z4N8 544 aa14.45□□□□□ -0.1
USP4-201ENST00000265560 CMTM4Q8IZR5 234 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms