RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 MBD2Q9UBB5 411 aa11.33□□□□□ -0.6
LIG1-201ENST00000263274 KLK13Q9UKR3 277 aa11.33□□□□□ -0.6
LIG1-201ENST00000263274 DENND4AQ7Z401 1863 aa11.33□□□□□ -0.6
LIG1-201ENST00000263274 CELSR3Q9NYQ7 3312 aa11.33□□□□□ -0.6
LIG1-201ENST00000263274 PCDH15Q96QU1 1955 aa11.33□□□□□ -0.6
LIG1-201ENST00000263274 A0A0B4J2A0 478 aa11.33□□□□□ -0.6
LIG1-201ENST00000263274 A0A1W2PPC1 479 aa11.33□□□□□ -0.6
LIG1-201ENST00000263274 TUBAL3A6NHL2 446 aa11.33□□□□□ -0.6
LIG1-201ENST00000263274 SGCEO43556 437 aa11.33□□□□□ -0.6
LIG1-201ENST00000263274 HTR3BO95264 441 aa11.33□□□□□ -0.6
LIG1-201ENST00000263274 FBLP22087 321 aaKnown RBP11.33□□□□□ -0.6
LIG1-201ENST00000263274 CRABP1P29762 137 aa11.33□□□□□ -0.6
LIG1-201ENST00000263274 TDHQ8IZJ6 230 aa11.33□□□□□ -0.6
LIG1-201ENST00000263274 OR52N4Q8NGI2 321 aa11.33□□□□□ -0.6
LIG1-201ENST00000263274 DCUN1D4Q92564 292 aa11.33□□□□□ -0.6
LIG1-201ENST00000263274 HOXB13Q92826 284 aaPredicted RBP11.33□□□□□ -0.6
LIG1-201ENST00000263274 ADAT1Q9BUB4 502 aaKnown RBP11.33□□□□□ -0.6
LIG1-201ENST00000263274 S1PR5Q9H228 398 aa11.33□□□□□ -0.6
LIG1-201ENST00000263274 CNTD2Q9H8S5 307 aa11.33□□□□□ -0.6
LIG1-201ENST00000263274 SHPKQ9UHJ6 478 aa11.33□□□□□ -0.6
LIG1-201ENST00000263274 RPH3AQ9Y2J0 694 aaPredicted RBP11.33□□□□□ -0.6
LIG1-201ENST00000263274 TRAV14DV4A0A0A6YYC5 116 aa11.32□□□□□ -0.6
LIG1-201ENST00000263274 A8MVM7 634 aa11.32□□□□□ -0.6
LIG1-201ENST00000263274 POLR2HP52434 150 aaKnown RBP11.32□□□□□ -0.6
LIG1-201ENST00000263274 UBXN2BQ14CS0 331 aa11.32□□□□□ -0.6
LIG1-201ENST00000263274 ASPHD2Q6ICH7 369 aa11.32□□□□□ -0.6
LIG1-201ENST00000263274 RTN4RL2Q86UN3 420 aa11.32□□□□□ -0.6
LIG1-201ENST00000263274 BPIFCQ8NFQ6 507 aa11.32□□□□□ -0.6
LIG1-201ENST00000263274 TREM1Q9NP99 234 aa11.32□□□□□ -0.6
LIG1-201ENST00000263274 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.32□□□□□ -0.6
LIG1-201ENST00000263274 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.32□□□□□ -0.6
LIG1-201ENST00000263274 RAB19A4D1S5 217 aa11.32□□□□□ -0.6
LIG1-201ENST00000263274 TXNDC12O95881 172 aa11.32□□□□□ -0.6
LIG1-201ENST00000263274 HCKP08631 526 aa11.32□□□□□ -0.6
LIG1-201ENST00000263274 ZNF20P17024 532 aa11.32□□□□□ -0.6
LIG1-201ENST00000263274 HSD11B1P28845 292 aa11.32□□□□□ -0.6
LIG1-201ENST00000263274 CD96P40200 585 aa11.32□□□□□ -0.6
LIG1-201ENST00000263274 FGL1Q08830 312 aa11.32□□□□□ -0.6
LIG1-201ENST00000263274 DMWDQ09019 674 aa11.32□□□□□ -0.6
LIG1-201ENST00000263274 ANGPTL5Q86XS5 388 aa11.32□□□□□ -0.6
LIG1-201ENST00000263274 C9orf40Q8IXQ3 194 aa11.32□□□□□ -0.6
LIG1-201ENST00000263274 ZFP82Q8N141 532 aa11.32□□□□□ -0.6
LIG1-201ENST00000263274 MARCH1Q8TCQ1 289 aa11.32□□□□□ -0.6
LIG1-201ENST00000263274 ADAMTS18Q8TE60 1221 aa11.32□□□□□ -0.6
LIG1-201ENST00000263274 PHB2Q99623 299 aa11.32□□□□□ -0.6
LIG1-201ENST00000263274 FOXQ1Q9C009 403 aa11.32□□□□□ -0.6
LIG1-201ENST00000263274 EXOSC3Q9NQT5 275 aaKnown RBP11.32□□□□□ -0.6
LIG1-201ENST00000263274 SUSD2Q9UGT4 822 aa11.32□□□□□ -0.6
LIG1-201ENST00000263274 MMP17Q9ULZ9 603 aa11.32□□□□□ -0.6
LIG1-201ENST00000263274 VSIG4Q9Y279 399 aa11.32□□□□□ -0.6
LIG1-201ENST00000263274 MEGF11A6BM72 1044 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 UBBP0CG47 229 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 UBCP0CG48 685 aaKnown RBP11.31□□□□□ -0.6
LIG1-201ENST00000263274 NPY4RP50391 375 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 BPIFB3P59826 476 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 RPS27AP62979 156 aaKnown RBP11.31□□□□□ -0.6
LIG1-201ENST00000263274 UBA52P62987 128 aaKnown RBP11.31□□□□□ -0.6
LIG1-201ENST00000263274 EBPQ15125 230 aaKnown RBP11.31□□□□□ -0.6
LIG1-201ENST00000263274 LY6G6FQ5SQ64 297 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 GKN2Q86XP6 184 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 NAXDQ8IW45 347 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 TMEM229BQ8NBD8 167 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 NAXEQ8NCW5 288 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 OR6K3Q8NGY3 331 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 RPS4Y2Q8TD47 263 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 MAFIPQ8WZ33 124 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 THRSPQ92748 146 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 MRPS24Q96EL2 167 aaKnown RBP11.31□□□□□ -0.6
LIG1-201ENST00000263274 ADAM19Q9H013 955 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 A0A0D9SG52 128 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 FRG2CA6NGY1 282 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 ITGB2P05107 769 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 RPA2P15927 270 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 MGMTP16455 207 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 BDKRB2P30411 391 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 EMP2P54851 167 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 BIDP55957 195 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 IGLV3-21P80748 117 aaPredicted RBP11.31□□□□□ -0.6
LIG1-201ENST00000263274 DHODHQ02127 395 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 FNDC7Q5VTL7 733 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 C11orf87Q6NUJ2 197 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 OR2W3Q7Z3T1 314 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 GTPBP8Q8N3Z3 284 aaPredicted RBP11.31□□□□□ -0.6
LIG1-201ENST00000263274 ADAD2Q8NCV1 583 aaKnown RBP11.31□□□□□ -0.6
LIG1-201ENST00000263274 TSTD1Q8NFU3 115 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 METTL8Q9H825 291 aaKnown RBP11.31□□□□□ -0.6
LIG1-201ENST00000263274 KLRF1Q9NZS2 232 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 IGKV1D-43A0A0B4J1Z2 117 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 ZNF208O43345 1280 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 CLPSP04118 112 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 MPGP29372 298 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 MEOX2P50222 304 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 PDSS1Q5T2R2 415 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 TMEM244Q5VVB8 128 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 ZNF704Q6ZNC4 412 aaPredicted RBP11.31□□□□□ -0.6
LIG1-201ENST00000263274 TMEM17Q86X19 198 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 CATSPERDQ86XM0 798 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 OR1S2Q8NGQ3 325 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 OR13C8Q8NGS7 320 aa11.31□□□□□ -0.6
LIG1-201ENST00000263274 ZDHHC12Q96GR4 267 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms