RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 ITFG2Q969R8 447 aa15.68■□□□□ 0.1
CLN3-259ENST00000637551 DIRC2Q96SL1 478 aa15.68■□□□□ 0.1
CLN3-259ENST00000637551 INTS14Q96SY0 518 aa15.68■□□□□ 0.1
CLN3-259ENST00000637551 CIB1Q99828 191 aa15.68■□□□□ 0.1
CLN3-259ENST00000637551 C9orf16Q9BUW7 83 aa15.68■□□□□ 0.1
CLN3-259ENST00000637551 TOR3AQ9H497 397 aa15.68■□□□□ 0.1
CLN3-259ENST00000637551 PNRC2Q9NPJ4 139 aaKnown RBP15.68■□□□□ 0.1
CLN3-259ENST00000637551 ORC6Q9Y5N6 252 aa15.68■□□□□ 0.1
CLN3-259ENST00000637551 SLC25A16P16260 332 aa15.67■□□□□ 0.1
CLN3-259ENST00000637551 CCNOP22674 350 aa15.67■□□□□ 0.1
CLN3-259ENST00000637551 SLC2A5P22732 501 aa15.67■□□□□ 0.1
CLN3-259ENST00000637551 GSTT1P30711 240 aa15.67■□□□□ 0.1
CLN3-259ENST00000637551 PYCR1P32322 319 aa15.67■□□□□ 0.1
CLN3-259ENST00000637551 SLC15A1P46059 708 aa15.67■□□□□ 0.1
CLN3-259ENST00000637551 ALDH3A2P51648 485 aa15.67■□□□□ 0.1
CLN3-259ENST00000637551 SNAPC1Q16533 368 aa15.67■□□□□ 0.1
CLN3-259ENST00000637551 CLEC12BQ2HXU8 276 aa15.67■□□□□ 0.1
CLN3-259ENST00000637551 LCN1P1Q5VSP4 162 aa15.67■□□□□ 0.1
CLN3-259ENST00000637551 CLEC2AQ6UVW9 174 aa15.67■□□□□ 0.1
CLN3-259ENST00000637551 FBXW12Q6X9E4 464 aa15.67■□□□□ 0.1
CLN3-259ENST00000637551 RFPL4BQ6ZWI9 263 aa15.67■□□□□ 0.1
CLN3-259ENST00000637551 PQLC1Q8N2U9 271 aa15.67■□□□□ 0.1
CLN3-259ENST00000637551 OR6K6Q8NGW6 343 aa15.67■□□□□ 0.1
CLN3-259ENST00000637551 ABHD4Q8TB40 342 aa15.67■□□□□ 0.1
CLN3-259ENST00000637551 STMN2Q93045 179 aa15.67■□□□□ 0.1
CLN3-259ENST00000637551 SPTSSAQ969W0 71 aa15.67■□□□□ 0.1
CLN3-259ENST00000637551 COX4I2Q96KJ9 171 aa15.67■□□□□ 0.1
CLN3-259ENST00000637551 FOXN4Q96NZ1 517 aa15.67■□□□□ 0.1
CLN3-259ENST00000637551 PITX2Q99697 317 aa15.67■□□□□ 0.1
CLN3-259ENST00000637551 PKP2Q99959 881 aa15.67■□□□□ 0.1
CLN3-259ENST00000637551 C1QTNF5Q9BXJ0 243 aa15.67■□□□□ 0.1
CLN3-259ENST00000637551 GSX1Q9H4S2 264 aaPredicted RBP15.67■□□□□ 0.1
CLN3-259ENST00000637551 OPA3Q9H6K4 179 aa15.67■□□□□ 0.1
CLN3-259ENST00000637551 HINT3Q9NQE9 182 aaKnown RBP15.67■□□□□ 0.1
CLN3-259ENST00000637551 ZNF878C9JN71 531 aa15.66■□□□□ 0.1
CLN3-259ENST00000637551 RAC2P15153 192 aa15.66■□□□□ 0.1
CLN3-259ENST00000637551 KITLGP21583 273 aa15.66■□□□□ 0.1
CLN3-259ENST00000637551 TPTEP56180 551 aa15.66■□□□□ 0.1
CLN3-259ENST00000637551 GRB2P62993 217 aaKnown RBP15.66■□□□□ 0.1
CLN3-259ENST00000637551 TMED1Q13445 227 aa15.66■□□□□ 0.1
CLN3-259ENST00000637551 GGTLC2Q14390 218 aa15.66■□□□□ 0.1
CLN3-259ENST00000637551 ZSCAN26Q16670 478 aa15.66■□□□□ 0.1
CLN3-259ENST00000637551 MSMPQ1L6U9 139 aa15.66■□□□□ 0.1
CLN3-259ENST00000637551 NXNL2Q5VZ03 156 aa15.66■□□□□ 0.1
CLN3-259ENST00000637551 PLBD1Q6P4A8 553 aa15.66■□□□□ 0.1
CLN3-259ENST00000637551 DRAM2Q6UX65 266 aa15.66■□□□□ 0.1
CLN3-259ENST00000637551 CFAP77Q6ZQR2 320 aa15.66■□□□□ 0.1
CLN3-259ENST00000637551 CXXC5Q7LFL8 322 aaKnown RBP15.66■□□□□ 0.1
CLN3-259ENST00000637551 TIGD4Q8IY51 512 aa15.66■□□□□ 0.1
CLN3-259ENST00000637551 ZNF540Q8NDQ6 660 aa15.66■□□□□ 0.1
CLN3-259ENST00000637551 KLF14Q8TD94 323 aaPredicted RBP15.66■□□□□ 0.1
CLN3-259ENST00000637551 ST7LQ8TDW4 575 aa15.66■□□□□ 0.1
CLN3-259ENST00000637551 TRUB1Q8WWH5 349 aaKnown RBP15.66■□□□□ 0.1
CLN3-259ENST00000637551 MAP6Q96JE9 813 aa15.66■□□□□ 0.1
CLN3-259ENST00000637551 C18orf12Q96KH6 178 aa15.66■□□□□ 0.1
CLN3-259ENST00000637551 Q96MF0 132 aa15.66■□□□□ 0.1
CLN3-259ENST00000637551 RDH12Q96NR8 316 aa15.66■□□□□ 0.1
CLN3-259ENST00000637551 SORCS2Q96PQ0 1159 aa15.66■□□□□ 0.1
CLN3-259ENST00000637551 MNTQ99583 582 aa15.66■□□□□ 0.1
CLN3-259ENST00000637551 SEMA6AQ9H2E6 1030 aa15.66■□□□□ 0.1
CLN3-259ENST00000637551 SP140LQ9H930 580 aa15.66■□□□□ 0.1
CLN3-259ENST00000637551 HAO2Q9NYQ3 351 aa15.66■□□□□ 0.1
CLN3-259ENST00000637551 TLN2Q9Y4G6 2542 aa15.65■□□□□ 0.1
CLN3-259ENST00000637551 VPS13CQ709C8 3753 aa15.65■□□□□ 0.1
CLN3-259ENST00000637551 A0A1W2PPW3 197 aa15.65■□□□□ 0.1
CLN3-259ENST00000637551 LOC390937A0A1W2PQ73 354 aa15.65■□□□□ 0.1
CLN3-259ENST00000637551 SLC22A31A6NKX4 558 aa15.65■□□□□ 0.1
CLN3-259ENST00000637551 ZNF593O00488 134 aaPredicted RBP15.65■□□□□ 0.1
CLN3-259ENST00000637551 GPANK1O95872 356 aa15.65■□□□□ 0.1
CLN3-259ENST00000637551 NKPD1Q17RQ9 610 aa15.65■□□□□ 0.1
CLN3-259ENST00000637551 CPOQ8IVL8 374 aa15.65■□□□□ 0.1
CLN3-259ENST00000637551 GID4Q8IVV7 300 aa15.65■□□□□ 0.1
CLN3-259ENST00000637551 ICA1LQ8NDH6 482 aa15.65■□□□□ 0.1
CLN3-259ENST00000637551 OR8J1Q8NGP2 316 aa15.65■□□□□ 0.1
CLN3-259ENST00000637551 SLC25A40Q8TBP6 338 aa15.65■□□□□ 0.1
CLN3-259ENST00000637551 TMEM163Q8TC26 289 aa15.65■□□□□ 0.1
CLN3-259ENST00000637551 RNF133Q8WVZ7 376 aa15.65■□□□□ 0.1
CLN3-259ENST00000637551 RHNO1Q9BSD3 238 aa15.65■□□□□ 0.1
CLN3-259ENST00000637551 HCAR1Q9BXC0 346 aa15.65■□□□□ 0.1
CLN3-259ENST00000637551 YIPF3Q9GZM5 350 aa15.65■□□□□ 0.1
CLN3-259ENST00000637551 NIPAL2Q9H841 368 aa15.65■□□□□ 0.1
CLN3-259ENST00000637551 WDR76Q9H967 626 aa15.65■□□□□ 0.1
CLN3-259ENST00000637551 DUSP13Q9UII6 198 aa15.65■□□□□ 0.1
CLN3-259ENST00000637551 ZDHHC8Q9ULC8 765 aa15.65■□□□□ 0.1
CLN3-259ENST00000637551 PLSCR5A0PG75 271 aa15.64■□□□□ 0.09
CLN3-259ENST00000637551 FAM183AA6NL82 134 aa15.64■□□□□ 0.09
CLN3-259ENST00000637551 C17orf100A8MU93 164 aa15.64■□□□□ 0.09
CLN3-259ENST00000637551 GYPBP06028 91 aa15.64■□□□□ 0.09
CLN3-259ENST00000637551 ACSM4P0C7M7 580 aa15.64■□□□□ 0.09
CLN3-259ENST00000637551 SELEP16581 610 aa15.64■□□□□ 0.09
CLN3-259ENST00000637551 GIFP27352 417 aa15.64■□□□□ 0.09
CLN3-259ENST00000637551 PDLIM4P50479 330 aa15.64■□□□□ 0.09
CLN3-259ENST00000637551 CORO6Q6QEF8 472 aa15.64■□□□□ 0.09
CLN3-259ENST00000637551 DEGS2Q6QHC5 323 aa15.64■□□□□ 0.09
CLN3-259ENST00000637551 DCXRQ7Z4W1 244 aa15.64■□□□□ 0.09
CLN3-259ENST00000637551 BIVMQ86UB2 503 aa15.64■□□□□ 0.09
CLN3-259ENST00000637551 LINC00346Q8IVM7 164 aa15.64■□□□□ 0.09
CLN3-259ENST00000637551 ZNF511Q8NB15 262 aa15.64■□□□□ 0.09
CLN3-259ENST00000637551 OTOSQ8NHW6 89 aa15.64■□□□□ 0.09
CLN3-259ENST00000637551 ZNRF4Q8WWF5 429 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms