RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 SPAG7O75391 227 aa11.88□□□□□ -0.51
CLN3-249ENST00000636685 HLA-DPB1P04440 258 aa11.88□□□□□ -0.51
CLN3-249ENST00000636685 ZCCHC18P0CG32 403 aa11.88□□□□□ -0.51
CLN3-249ENST00000636685 HOXD3P31249 432 aaPredicted RBP11.88□□□□□ -0.51
CLN3-249ENST00000636685 HTR5AP47898 357 aa11.88□□□□□ -0.51
CLN3-249ENST00000636685 PCBD1P61457 104 aa11.88□□□□□ -0.51
CLN3-249ENST00000636685 RPL18Q07020 188 aaKnown RBP11.88□□□□□ -0.51
CLN3-249ENST00000636685 CD47Q08722 323 aa11.88□□□□□ -0.51
CLN3-249ENST00000636685 KLRD1Q13241 179 aa11.88□□□□□ -0.51
CLN3-249ENST00000636685 ENDOGQ14249 297 aaKnown RBP11.88□□□□□ -0.51
CLN3-249ENST00000636685 CDONQ4KMG0 1287 aa11.88□□□□□ -0.51
CLN3-249ENST00000636685 CLEC12AQ5QGZ9 265 aa11.88□□□□□ -0.51
CLN3-249ENST00000636685 CASC10Q5T4H9 136 aa11.88□□□□□ -0.51
CLN3-249ENST00000636685 HHATQ5VTY9 493 aa11.88□□□□□ -0.51
CLN3-249ENST00000636685 C10orf111Q8N326 155 aa11.88□□□□□ -0.51
CLN3-249ENST00000636685 BOLLQ8N9W6 283 aaKnown RBP11.88□□□□□ -0.51
CLN3-249ENST00000636685 NFKBIDQ8NI38 313 aa11.88□□□□□ -0.51
CLN3-249ENST00000636685 AENQ8WTP8 325 aaKnown RBP11.88□□□□□ -0.51
CLN3-249ENST00000636685 SMURF2Q9HAU4 748 aa11.88□□□□□ -0.51
CLN3-249ENST00000636685 AIG1Q9NVV5 245 aa11.88□□□□□ -0.51
CLN3-249ENST00000636685 PTTG3PQ9NZH4 202 aa11.88□□□□□ -0.51
CLN3-249ENST00000636685 ONECUT1Q9UBC0 465 aa11.88□□□□□ -0.51
CLN3-249ENST00000636685 MAB21L2Q9Y586 359 aa11.88□□□□□ -0.51
CLN3-249ENST00000636685 KPTNQ9Y664 436 aa11.88□□□□□ -0.51
CLN3-249ENST00000636685 E9PQ18 207 aa11.87□□□□□ -0.51
CLN3-249ENST00000636685 SCG5P05408 212 aa11.87□□□□□ -0.51
CLN3-249ENST00000636685 EEF1B2P24534 225 aaKnown RBP11.87□□□□□ -0.51
CLN3-249ENST00000636685 DAP3P51398 398 aaKnown RBP11.87□□□□□ -0.51
CLN3-249ENST00000636685 HABP2Q14520 560 aaPredicted RBP11.87□□□□□ -0.51
CLN3-249ENST00000636685 RGNQ15493 299 aa11.87□□□□□ -0.51
CLN3-249ENST00000636685 ARMC4Q5T2S8 1044 aa11.87□□□□□ -0.51
CLN3-249ENST00000636685 PRAMEF6Q5VXH4 476 aa11.87□□□□□ -0.51
CLN3-249ENST00000636685 NXNQ6DKJ4 435 aa11.87□□□□□ -0.51
CLN3-249ENST00000636685 HDDC2Q7Z4H3 204 aa11.87□□□□□ -0.51
CLN3-249ENST00000636685 FGFRL1Q8N441 504 aa11.87□□□□□ -0.51
CLN3-249ENST00000636685 CLDN22Q8N7P3 220 aa11.87□□□□□ -0.51
CLN3-249ENST00000636685 GOLGA6L1Q8N7Z2 621 aa11.87□□□□□ -0.51
CLN3-249ENST00000636685 PAPD5Q8NDF8 572 aaKnown RBP11.87□□□□□ -0.51
CLN3-249ENST00000636685 BHLHE23Q8NDY6 225 aa11.87□□□□□ -0.51
CLN3-249ENST00000636685 OR11L1Q8NGX0 322 aa11.87□□□□□ -0.51
CLN3-249ENST00000636685 Q8TCH9 128 aa11.87□□□□□ -0.51
CLN3-249ENST00000636685 SLC7A6Q92536 515 aa11.87□□□□□ -0.51
CLN3-249ENST00000636685 ZNF582Q96NG8 517 aaPredicted RBP11.87□□□□□ -0.51
CLN3-249ENST00000636685 ZBTB18Q99592 522 aa11.87□□□□□ -0.51
CLN3-249ENST00000636685 MCHR1Q99705 422 aa11.87□□□□□ -0.51
CLN3-249ENST00000636685 PCDHAC1Q9H158 963 aa11.87□□□□□ -0.51
CLN3-249ENST00000636685 RANBP3Q9H6Z4 567 aaPredicted RBP11.87□□□□□ -0.51
CLN3-249ENST00000636685 UFSP2Q9NUQ7 469 aa11.87□□□□□ -0.51
CLN3-249ENST00000636685 ANGPT4Q9Y264 503 aa11.87□□□□□ -0.51
CLN3-249ENST00000636685 A0A1W2PRX2 142 aa11.86□□□□□ -0.51
CLN3-249ENST00000636685 MEIOCA2RUB1 952 aa11.86□□□□□ -0.51
CLN3-249ENST00000636685 MEGF11A6BM72 1044 aa11.86□□□□□ -0.51
CLN3-249ENST00000636685 LGALS8O00214 317 aa11.86□□□□□ -0.51
CLN3-249ENST00000636685 CHP2O43745 196 aa11.86□□□□□ -0.51
CLN3-249ENST00000636685 DOK2O60496 412 aa11.86□□□□□ -0.51
CLN3-249ENST00000636685 LYPD3O95274 346 aa11.86□□□□□ -0.51
CLN3-249ENST00000636685 THY1P04216 161 aa11.86□□□□□ -0.51
CLN3-249ENST00000636685 BPGMP07738 259 aa11.86□□□□□ -0.51
CLN3-249ENST00000636685 COX5BP10606 129 aa11.86□□□□□ -0.51
CLN3-249ENST00000636685 BMP2P12643 396 aa11.86□□□□□ -0.51
CLN3-249ENST00000636685 SAA4P35542 130 aa11.86□□□□□ -0.51
CLN3-249ENST00000636685 AQP2P41181 271 aa11.86□□□□□ -0.51
CLN3-249ENST00000636685 GATA4P43694 442 aa11.86□□□□□ -0.51
CLN3-249ENST00000636685 MAB21L1Q13394 359 aa11.86□□□□□ -0.51
CLN3-249ENST00000636685 KLHL22Q53GT1 634 aa11.86□□□□□ -0.51
CLN3-249ENST00000636685 DMRTC1Q5HYR2 192 aa11.86□□□□□ -0.51
CLN3-249ENST00000636685 ZNF613Q6PF04 617 aa11.86□□□□□ -0.51
CLN3-249ENST00000636685 TTC33Q6PID6 262 aaPredicted RBP11.86□□□□□ -0.51
CLN3-249ENST00000636685 METAP1DQ6UB28 335 aaPredicted RBP11.86□□□□□ -0.51
CLN3-249ENST00000636685 SLC30A8Q8IWU4 369 aa11.86□□□□□ -0.51
CLN3-249ENST00000636685 TCP10LQ8TDR4 215 aa11.86□□□□□ -0.51
CLN3-249ENST00000636685 PKNOX2Q96KN3 472 aa11.86□□□□□ -0.51
CLN3-249ENST00000636685 SSX3Q99909 188 aa11.86□□□□□ -0.51
CLN3-249ENST00000636685 INIPQ9NRY2 104 aa11.86□□□□□ -0.51
CLN3-249ENST00000636685 SERTAD4Q9NUC0 356 aa11.86□□□□□ -0.51
CLN3-249ENST00000636685 RPUSD1Q9UJJ7 312 aaKnown RBP11.86□□□□□ -0.51
CLN3-249ENST00000636685 STARD9Q9P2P6 4700 aa11.85□□□□□ -0.51
CLN3-249ENST00000636685 LCE6AA0A183 80 aa11.85□□□□□ -0.51
CLN3-249ENST00000636685 A0A1W2PPL8 197 aa11.85□□□□□ -0.51
CLN3-249ENST00000636685 WDR91A4D1P6 747 aa11.85□□□□□ -0.51
CLN3-249ENST00000636685 CPSF4LA6NMK7 179 aaKnown RBP11.85□□□□□ -0.51
CLN3-249ENST00000636685 M0R3H8 397 aa11.85□□□□□ -0.51
CLN3-249ENST00000636685 DVL1O14640 695 aa11.85□□□□□ -0.51
CLN3-249ENST00000636685 POLR3GO15318 223 aaPredicted RBP11.85□□□□□ -0.51
CLN3-249ENST00000636685 GYPAP02724 150 aa11.85□□□□□ -0.51
CLN3-249ENST00000636685 NHLRC4P0CG21 123 aaPredicted RBP11.85□□□□□ -0.51
CLN3-249ENST00000636685 GUCA2AQ02747 115 aa11.85□□□□□ -0.51
CLN3-249ENST00000636685 MPPED2Q15777 294 aa11.85□□□□□ -0.51
CLN3-249ENST00000636685 KCNJ8Q15842 424 aa11.85□□□□□ -0.51
CLN3-249ENST00000636685 OGFOD2Q6N063 350 aa11.85□□□□□ -0.51
CLN3-249ENST00000636685 CRIP3Q6Q6R5 217 aa11.85□□□□□ -0.51
CLN3-249ENST00000636685 FBXW12Q6X9E4 464 aa11.85□□□□□ -0.51
CLN3-249ENST00000636685 FOXL2NBQ6ZUU3 175 aa11.85□□□□□ -0.51
CLN3-249ENST00000636685 RNF144BQ7Z419 303 aa11.85□□□□□ -0.51
CLN3-249ENST00000636685 MOSPD2Q8NHP6 518 aa11.85□□□□□ -0.51
CLN3-249ENST00000636685 C17orf50Q8WW18 174 aa11.85□□□□□ -0.51
CLN3-249ENST00000636685 ST8SIA4Q92187 359 aa11.85□□□□□ -0.51
CLN3-249ENST00000636685 RORBQ92753 470 aa11.85□□□□□ -0.51
CLN3-249ENST00000636685 COG8Q96MW5 612 aa11.85□□□□□ -0.51
CLN3-249ENST00000636685 SPATA5L1Q9BVQ7 753 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms