RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 CXorf51AA0A1B0GTR3 108 aa12.71□□□□□ -0.37
CPSF1-212ENST00000616140 A0A1B0GUH1 482 aa12.71□□□□□ -0.37
CPSF1-212ENST00000616140 OR2F2O95006 317 aa12.71□□□□□ -0.37
CPSF1-212ENST00000616140 ATF1P18846 271 aa12.71□□□□□ -0.37
CPSF1-212ENST00000616140 PSMB6P28072 239 aa12.71□□□□□ -0.37
CPSF1-212ENST00000616140 CRYBB2P43320 205 aa12.71□□□□□ -0.37
CPSF1-212ENST00000616140 OR2F1Q13607 317 aa12.71□□□□□ -0.37
CPSF1-212ENST00000616140 LANCL3Q6ZV70 420 aa12.71□□□□□ -0.37
CPSF1-212ENST00000616140 ST8SIA1Q92185 356 aa12.71□□□□□ -0.37
CPSF1-212ENST00000616140 ARHGDIGQ99819 225 aa12.71□□□□□ -0.37
CPSF1-212ENST00000616140 TAF9BQ9HBM6 251 aa12.71□□□□□ -0.37
CPSF1-212ENST00000616140 EXO1Q9UQ84 846 aaKnown RBP12.71□□□□□ -0.37
CPSF1-212ENST00000616140 ARGFXA6NJG6 315 aa12.71□□□□□ -0.37
CPSF1-212ENST00000616140 PRSS23O95084 383 aa12.71□□□□□ -0.37
CPSF1-212ENST00000616140 F2RL1P55085 397 aa12.71□□□□□ -0.37
CPSF1-212ENST00000616140 CDK5Q00535 292 aa12.71□□□□□ -0.37
CPSF1-212ENST00000616140 EXT1Q16394 746 aa12.71□□□□□ -0.37
CPSF1-212ENST00000616140 RNF165Q6ZSG1 346 aa12.71□□□□□ -0.37
CPSF1-212ENST00000616140 ACOT7LQ6ZUV0 252 aa12.71□□□□□ -0.37
CPSF1-212ENST00000616140 SYT13Q7L8C5 426 aa12.71□□□□□ -0.37
CPSF1-212ENST00000616140 ZNF547Q8IVP9 402 aa12.71□□□□□ -0.37
CPSF1-212ENST00000616140 OR4C16Q8NGL9 310 aa12.71□□□□□ -0.37
CPSF1-212ENST00000616140 GPR119Q8TDV5 335 aa12.71□□□□□ -0.37
CPSF1-212ENST00000616140 KCNJ15Q99712 375 aa12.71□□□□□ -0.37
CPSF1-212ENST00000616140 PLEKHB1Q9UF11 243 aaPredicted RBP12.71□□□□□ -0.37
CPSF1-212ENST00000616140 POMT2Q9UKY4 750 aa12.71□□□□□ -0.37
CPSF1-212ENST00000616140 TIMM8AO60220 97 aaPredicted RBP12.71□□□□□ -0.38
CPSF1-212ENST00000616140 CTSVO60911 334 aa12.71□□□□□ -0.38
CPSF1-212ENST00000616140 TUSC2O75896 110 aa12.71□□□□□ -0.38
CPSF1-212ENST00000616140 PTHLHP12272 177 aa12.71□□□□□ -0.38
CPSF1-212ENST00000616140 LAP3P28838 519 aa12.71□□□□□ -0.38
CPSF1-212ENST00000616140 PNLIPRP2P54317 469 aa12.71□□□□□ -0.38
CPSF1-212ENST00000616140 MCCD1P59942 119 aaPredicted RBP12.71□□□□□ -0.38
CPSF1-212ENST00000616140 SNRPNP63162 240 aaKnown RBP12.71□□□□□ -0.38
CPSF1-212ENST00000616140 TESK1Q15569 626 aa12.71□□□□□ -0.38
CPSF1-212ENST00000616140 SSX2Q16385 188 aa12.71□□□□□ -0.38
CPSF1-212ENST00000616140 BATFQ16520 125 aa12.71□□□□□ -0.38
CPSF1-212ENST00000616140 TMPRSS11FQ6ZWK6 438 aa12.71□□□□□ -0.38
CPSF1-212ENST00000616140 ARAP2Q8WZ64 1704 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 OR4E1P0C645 316 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 BCKDHBP21953 392 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 LINC00303Q3SY05 128 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 AVPI1Q5T686 147 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 MRGPRX3Q96LB0 322 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 B9D1Q9UPM9 204 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 A0A087WUJ7 227 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 SCGB2A1O75556 95 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 FKBP2P26885 142 aaKnown RBP12.7□□□□□ -0.38
CPSF1-212ENST00000616140 ECI1P42126 302 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 CCR5P51681 352 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 GPNMBQ14956 572 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 PAN3Q58A45 887 aaKnown RBP12.7□□□□□ -0.38
CPSF1-212ENST00000616140 THEM4Q5T1C6 240 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 SFT2D1Q8WV19 159 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 PELI1Q96FA3 418 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 ZNF2Q9BSG1 426 aaPredicted RBP12.7□□□□□ -0.38
CPSF1-212ENST00000616140 FOXQ1Q9C009 403 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 EXOSC3Q9NQT5 275 aaKnown RBP12.7□□□□□ -0.38
CPSF1-212ENST00000616140 TRAV1-2A0A0B4J238 106 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 FAM221AA4D161 298 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 IGHA2P01877 340 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 CD80P33681 288 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 C17orf107Q6ZR85 190 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 OR6K3Q8NGY3 331 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 MARCH1Q8TCQ1 289 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 WDR89Q96FK6 387 aaPredicted RBP12.7□□□□□ -0.38
CPSF1-212ENST00000616140 SAMD10Q9BYL1 202 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 TRAPPC4Q9Y296 219 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 FAM166BA8MTA8 275 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 SNRPGP15A8MWD9 76 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 HPNP05981 417 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 HOXB3P14651 431 aaPredicted RBP12.7□□□□□ -0.38
CPSF1-212ENST00000616140 PCMT1P22061 227 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 HRH1P35367 487 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 NKX2-1P43699 371 aaPredicted RBP12.7□□□□□ -0.38
CPSF1-212ENST00000616140 CD300CQ08708 224 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 BAMBIQ13145 260 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 HMGN3Q15651 99 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 RBMS3Q6XE24 437 aaKnown RBP12.7□□□□□ -0.38
CPSF1-212ENST00000616140 OR52B4Q8NGK2 314 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 S1PR5Q9H228 398 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 C12orf49Q9H741 205 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 ERVMER34-1Q9H9K5 563 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 SMCO4Q9NRQ5 59 aa12.7□□□□□ -0.38
CPSF1-212ENST00000616140 SPTY2D1-AS1A0A0U1RR47 76 aa12.69□□□□□ -0.38
CPSF1-212ENST00000616140 DSCR3O14972 297 aa12.69□□□□□ -0.38
CPSF1-212ENST00000616140 TBX19O60806 448 aa12.69□□□□□ -0.38
CPSF1-212ENST00000616140 TBXA2RP21731 343 aa12.69□□□□□ -0.38
CPSF1-212ENST00000616140 PCBP3P57721 371 aaKnown RBP12.69□□□□□ -0.38
CPSF1-212ENST00000616140 TAGLNQ01995 201 aaKnown RBP12.69□□□□□ -0.38
CPSF1-212ENST00000616140 PRSS41Q7RTY9 318 aa12.69□□□□□ -0.38
CPSF1-212ENST00000616140 OR13C8Q8NGS7 320 aa12.69□□□□□ -0.38
CPSF1-212ENST00000616140 OR51F2Q8NH61 342 aa12.69□□□□□ -0.38
CPSF1-212ENST00000616140 UCN3Q969E3 161 aa12.69□□□□□ -0.38
CPSF1-212ENST00000616140 APH1AQ96BI3 265 aa12.69□□□□□ -0.38
CPSF1-212ENST00000616140 FAM234AQ9H0X4 552 aa12.69□□□□□ -0.38
CPSF1-212ENST00000616140 MOB1AQ9H8S9 216 aa12.69□□□□□ -0.38
CPSF1-212ENST00000616140 MBD1Q9UIS9 605 aaPredicted RBP12.69□□□□□ -0.38
CPSF1-212ENST00000616140 R4GMQ9 66 aa12.69□□□□□ -0.38
CPSF1-212ENST00000616140 KIR2DS1A0A191URI9 304 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms