RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 MRI1Q9BV20 369 aa10.54□□□□□ -0.72
TRIM28-212ENST00000597995 MSL2Q9HCI7 577 aa10.54□□□□□ -0.72
TRIM28-212ENST00000597995 EMC7Q9NPA0 242 aa10.54□□□□□ -0.72
TRIM28-212ENST00000597995 NRIP3Q9NQ35 241 aa10.54□□□□□ -0.72
TRIM28-212ENST00000597995 POLE4Q9NR33 117 aa10.54□□□□□ -0.72
TRIM28-212ENST00000597995 MAGEL2Q9UJ55 1249 aa10.54□□□□□ -0.72
TRIM28-212ENST00000597995 FAM32AQ9Y421 112 aaKnown RBP10.54□□□□□ -0.72
TRIM28-212ENST00000597995 TEX13CA0A0J9YWL9 993 aa10.53□□□□□ -0.72
TRIM28-212ENST00000597995 A0A1W2PPL8 197 aa10.53□□□□□ -0.72
TRIM28-212ENST00000597995 PRSS37A4D1T9 235 aa10.53□□□□□ -0.72
TRIM28-212ENST00000597995 F5H0A9 414 aaPredicted RBP10.53□□□□□ -0.72
TRIM28-212ENST00000597995 TIMM8AO60220 97 aaPredicted RBP10.53□□□□□ -0.72
TRIM28-212ENST00000597995 NDUFB2O95178 105 aa10.53□□□□□ -0.72
TRIM28-212ENST00000597995 PPIAL4GP0DN37 164 aa10.53□□□□□ -0.72
TRIM28-212ENST00000597995 COX5BP10606 129 aa10.53□□□□□ -0.72
TRIM28-212ENST00000597995 GSTM3P21266 225 aa10.53□□□□□ -0.72
TRIM28-212ENST00000597995 TNFSF4P23510 183 aa10.53□□□□□ -0.72
TRIM28-212ENST00000597995 BTG1P62324 171 aa10.53□□□□□ -0.72
TRIM28-212ENST00000597995 PAX8Q06710 450 aa10.53□□□□□ -0.72
TRIM28-212ENST00000597995 DBPQ10586 325 aaPredicted RBP10.53□□□□□ -0.72
TRIM28-212ENST00000597995 PSG7Q13046 419 aa10.53□□□□□ -0.72
TRIM28-212ENST00000597995 SAMD4BQ5PRF9 694 aaKnown RBP10.53□□□□□ -0.72
TRIM28-212ENST00000597995 ZNF774Q6NX45 483 aa10.53□□□□□ -0.72
TRIM28-212ENST00000597995 TREML4Q6UXN2 200 aa10.53□□□□□ -0.72
TRIM28-212ENST00000597995 PTCHD4Q6ZW05 846 aa10.53□□□□□ -0.72
TRIM28-212ENST00000597995 DEFB107AQ8IZN7 70 aa10.53□□□□□ -0.72
TRIM28-212ENST00000597995 BCL6BQ8N143 479 aaPredicted RBP10.53□□□□□ -0.72
TRIM28-212ENST00000597995 FITM2Q8N6M3 262 aa10.53□□□□□ -0.72
TRIM28-212ENST00000597995 NPEPL1Q8NDH3 523 aa10.53□□□□□ -0.72
TRIM28-212ENST00000597995 SLC25A28Q96A46 364 aa10.53□□□□□ -0.72
TRIM28-212ENST00000597995 RSRC1Q96IZ7 334 aaKnown RBP10.53□□□□□ -0.72
TRIM28-212ENST00000597995 ZNF48Q96MX3 618 aaPredicted RBP10.53□□□□□ -0.72
TRIM28-212ENST00000597995 ZNF570Q96NI8 536 aa10.53□□□□□ -0.72
TRIM28-212ENST00000597995 DUX5Q96PT3 197 aa10.53□□□□□ -0.72
TRIM28-212ENST00000597995 C1QTNF5Q9BXJ0 243 aa10.53□□□□□ -0.72
TRIM28-212ENST00000597995 SLITRK2Q9H156 845 aa10.53□□□□□ -0.72
TRIM28-212ENST00000597995 UNKLQ9H9P5 680 aaKnown RBP10.53□□□□□ -0.72
TRIM28-212ENST00000597995 TBCCD1Q9NVR7 557 aa10.53□□□□□ -0.72
TRIM28-212ENST00000597995 DCAF16Q9NXF7 216 aa10.53□□□□□ -0.72
TRIM28-212ENST00000597995 GRHPRQ9UBQ7 328 aa10.53□□□□□ -0.72
TRIM28-212ENST00000597995 NDRG4Q9ULP0 352 aaKnown RBP10.53□□□□□ -0.72
TRIM28-212ENST00000597995 UNC119BA6NIH7 251 aa10.52□□□□□ -0.73
TRIM28-212ENST00000597995 C12orf71A8MTZ7 269 aa10.52□□□□□ -0.73
TRIM28-212ENST00000597995 DCTN6O00399 190 aa10.52□□□□□ -0.73
TRIM28-212ENST00000597995 AHCYL1O43865 530 aa10.52□□□□□ -0.73
TRIM28-212ENST00000597995 TXNDC12O95881 172 aa10.52□□□□□ -0.73
TRIM28-212ENST00000597995 MSR1P21757 451 aa10.52□□□□□ -0.73
TRIM28-212ENST00000597995 SDHAP31040 664 aa10.52□□□□□ -0.73
TRIM28-212ENST00000597995 CDKN2AP42771 156 aaKnown RBP10.52□□□□□ -0.73
TRIM28-212ENST00000597995 MTNR1AP48039 350 aa10.52□□□□□ -0.73
TRIM28-212ENST00000597995 KRR1Q13601 381 aaKnown RBP10.52□□□□□ -0.73
TRIM28-212ENST00000597995 KRT72Q14CN4 511 aa10.52□□□□□ -0.73
TRIM28-212ENST00000597995 ESCO2Q56NI9 601 aa10.52□□□□□ -0.73
TRIM28-212ENST00000597995 C9orf139Q6ZV77 190 aa10.52□□□□□ -0.73
TRIM28-212ENST00000597995 NSMCE2Q96MF7 247 aa10.52□□□□□ -0.73
TRIM28-212ENST00000597995 CCT8L2Q96SF2 557 aa10.52□□□□□ -0.73
TRIM28-212ENST00000597995 MS4A7Q9GZW8 240 aaPredicted RBP10.52□□□□□ -0.73
TRIM28-212ENST00000597995 SYT4Q9H2B2 425 aa10.52□□□□□ -0.73
TRIM28-212ENST00000597995 VSX1Q9NZR4 365 aaPredicted RBP10.52□□□□□ -0.73
TRIM28-212ENST00000597995 IL19Q9UHD0 177 aa10.52□□□□□ -0.73
TRIM28-212ENST00000597995 IER3IP1Q9Y5U9 82 aa10.52□□□□□ -0.73
TRIM28-212ENST00000597995 IFNL4K9M1U5 179 aa10.51□□□□□ -0.73
TRIM28-212ENST00000597995 SOCS2O14508 198 aa10.51□□□□□ -0.73
TRIM28-212ENST00000597995 SURF4O15260 269 aa10.51□□□□□ -0.73
TRIM28-212ENST00000597995 GMNNO75496 209 aa10.51□□□□□ -0.73
TRIM28-212ENST00000597995 DCTN3O75935 186 aa10.51□□□□□ -0.73
TRIM28-212ENST00000597995 GADD45GO95257 159 aa10.51□□□□□ -0.73
TRIM28-212ENST00000597995 ABHD16AO95870 558 aa10.51□□□□□ -0.73
TRIM28-212ENST00000597995 GPANK1O95872 356 aa10.51□□□□□ -0.73
TRIM28-212ENST00000597995 T-ENOLP0DO92 83 aa10.51□□□□□ -0.73
TRIM28-212ENST00000597995 ATP6V1B2P21281 511 aa10.51□□□□□ -0.73
TRIM28-212ENST00000597995 KITLGP21583 273 aa10.51□□□□□ -0.73
TRIM28-212ENST00000597995 MDH2P40926 338 aaKnown RBP10.51□□□□□ -0.73
TRIM28-212ENST00000597995 SEC61A1P61619 476 aaKnown RBP10.51□□□□□ -0.73
TRIM28-212ENST00000597995 DEFA6Q01524 100 aa10.51□□□□□ -0.73
TRIM28-212ENST00000597995 SPIBQ01892 262 aa10.51□□□□□ -0.73
TRIM28-212ENST00000597995 ZMYND11Q15326 602 aa10.51□□□□□ -0.73
TRIM28-212ENST00000597995 SLC9A3R2Q15599 337 aa10.51□□□□□ -0.73
TRIM28-212ENST00000597995 OCLNQ16625 522 aa10.51□□□□□ -0.73
TRIM28-212ENST00000597995 GPR139Q6DWJ6 353 aa10.51□□□□□ -0.73
TRIM28-212ENST00000597995 C16orf89Q6UX73 402 aa10.51□□□□□ -0.73
TRIM28-212ENST00000597995 DPY19L2P2Q6ZN68 376 aa10.51□□□□□ -0.73
TRIM28-212ENST00000597995 MUC20Q8N307 709 aaPredicted RBP10.51□□□□□ -0.73
TRIM28-212ENST00000597995 OR2Z1Q8NG97 314 aa10.51□□□□□ -0.73
TRIM28-212ENST00000597995 HAVCR1Q96D42 359 aa10.51□□□□□ -0.73
TRIM28-212ENST00000597995 COG8Q96MW5 612 aa10.51□□□□□ -0.73
TRIM28-212ENST00000597995 TSSK2Q96PF2 358 aa10.51□□□□□ -0.73
TRIM28-212ENST00000597995 SIGLEC11Q96RL6 698 aa10.51□□□□□ -0.73
TRIM28-212ENST00000597995 NUAK2Q9H093 628 aa10.51□□□□□ -0.73
TRIM28-212ENST00000597995 POFUT1Q9H488 388 aa10.51□□□□□ -0.73
TRIM28-212ENST00000597995 IL1RAPQ9NPH3 570 aa10.51□□□□□ -0.73
TRIM28-212ENST00000597995 OR5V1Q9UGF6 321 aa10.51□□□□□ -0.73
TRIM28-212ENST00000597995 AURKCQ9UQB9 309 aa10.51□□□□□ -0.73
TRIM28-212ENST00000597995 PPP1R3CQ9UQK1 317 aa10.51□□□□□ -0.73
TRIM28-212ENST00000597995 LRCH1Q9Y2L9 728 aa10.51□□□□□ -0.73
TRIM28-212ENST00000597995 COA3Q9Y2R0 106 aaPredicted RBP10.51□□□□□ -0.73
TRIM28-212ENST00000597995 TCRBV5S2A0A599 114 aa10.5□□□□□ -0.73
TRIM28-212ENST00000597995 TMEM178BH3BS89 294 aa10.5□□□□□ -0.73
TRIM28-212ENST00000597995 XKRYO14609 159 aa10.5□□□□□ -0.73
TRIM28-212ENST00000597995 SLC16A7O60669 478 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms