RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 TMEM41AQ96HV5 264 aa17.48■□□□□ 0.39
CLIP3-206ENST00000593074 SGCZQ96LD1 299 aa17.48■□□□□ 0.39
CLIP3-206ENST00000593074 EDEM2Q9BV94 578 aa17.48■□□□□ 0.39
CLIP3-206ENST00000593074 EMC7Q9NPA0 242 aa17.48■□□□□ 0.39
CLIP3-206ENST00000593074 TMEM9BQ9NQ34 198 aa17.48■□□□□ 0.39
CLIP3-206ENST00000593074 EMC3Q9P0I2 261 aa17.48■□□□□ 0.39
CLIP3-206ENST00000593074 MTFP1Q9UDX5 166 aa17.48■□□□□ 0.39
CLIP3-206ENST00000593074 ZNF878C9JN71 531 aa17.47■□□□□ 0.39
CLIP3-206ENST00000593074 CDAP32320 146 aa17.47■□□□□ 0.39
CLIP3-206ENST00000593074 Q0VFX4 171 aa17.47■□□□□ 0.39
CLIP3-206ENST00000593074 RAET1LQ5VY80 246 aa17.47■□□□□ 0.39
CLIP3-206ENST00000593074 SFRP4Q6FHJ7 346 aaPredicted RBP17.47■□□□□ 0.39
CLIP3-206ENST00000593074 FGD2Q7Z6J4 655 aa17.47■□□□□ 0.39
CLIP3-206ENST00000593074 LYPD6Q86Y78 171 aa17.47■□□□□ 0.39
CLIP3-206ENST00000593074 JSRP1Q96MG2 331 aaPredicted RBP17.47■□□□□ 0.39
CLIP3-206ENST00000593074 TMEM246Q9BRR3 403 aa17.47■□□□□ 0.39
CLIP3-206ENST00000593074 PBOV1Q9GZY1 135 aa17.47■□□□□ 0.39
CLIP3-206ENST00000593074 SEC61A2Q9H9S3 476 aa17.47■□□□□ 0.39
CLIP3-206ENST00000593074 DKKL1Q9UK85 242 aa17.47■□□□□ 0.39
CLIP3-206ENST00000593074 CCDC187A0A096LP49 1063 aa17.46■□□□□ 0.39
CLIP3-206ENST00000593074 OR2M5A3KFT3 312 aa17.46■□□□□ 0.39
CLIP3-206ENST00000593074 ZNF726A6NNF4 738 aa17.46■□□□□ 0.39
CLIP3-206ENST00000593074 G3V3Y1 287 aa17.46■□□□□ 0.39
CLIP3-206ENST00000593074 LMX1BO60663 402 aa17.46■□□□□ 0.39
CLIP3-206ENST00000593074 KDM4BO94953 1096 aa17.46■□□□□ 0.39
CLIP3-206ENST00000593074 PSMA6P60900 246 aaKnown RBP17.46■□□□□ 0.39
CLIP3-206ENST00000593074 ZNF468Q5VIY5 522 aaPredicted RBP17.46■□□□□ 0.39
CLIP3-206ENST00000593074 MOB1AQ9H8S9 216 aa17.46■□□□□ 0.39
CLIP3-206ENST00000593074 POLR1DQ9Y2S0 133 aa17.46■□□□□ 0.39
CLIP3-206ENST00000593074 MRPS18BQ9Y676 258 aaKnown RBP17.46■□□□□ 0.39
CLIP3-206ENST00000593074 EIF1BO60739 113 aaKnown RBP17.46■□□□□ 0.39
CLIP3-206ENST00000593074 ALDOBP05062 364 aa17.46■□□□□ 0.39
CLIP3-206ENST00000593074 QDPRP09417 244 aa17.46■□□□□ 0.39
CLIP3-206ENST00000593074 NDUFA5Q16718 116 aa17.46■□□□□ 0.39
CLIP3-206ENST00000593074 C1orf100Q5SVJ3 147 aa17.46■□□□□ 0.39
CLIP3-206ENST00000593074 TMEM53Q6P2H8 277 aa17.46■□□□□ 0.39
CLIP3-206ENST00000593074 ESX1Q8N693 406 aa17.46■□□□□ 0.39
CLIP3-206ENST00000593074 OR2AJ1Q8NGZ0 328 aa17.46■□□□□ 0.39
CLIP3-206ENST00000593074 NKX3-1Q99801 234 aaPredicted RBP17.46■□□□□ 0.39
CLIP3-206ENST00000593074 P4HTMQ9NXG6 502 aa17.46■□□□□ 0.39
CLIP3-206ENST00000593074 FOXJ2Q9P0K8 574 aa17.46■□□□□ 0.39
CLIP3-206ENST00000593074 CGGBP1Q9UFW8 167 aaPredicted RBP17.46■□□□□ 0.39
CLIP3-206ENST00000593074 RHBDD3Q9Y3P4 386 aa17.46■□□□□ 0.39
CLIP3-206ENST00000593074 A0A1W2PNU3 283 aaPredicted RBP17.45■□□□□ 0.38
CLIP3-206ENST00000593074 LDLRAD4O15165 306 aa17.45■□□□□ 0.38
CLIP3-206ENST00000593074 TLX3O43711 291 aaPredicted RBP17.45■□□□□ 0.38
CLIP3-206ENST00000593074 NR2C1P13056 603 aa17.45■□□□□ 0.38
CLIP3-206ENST00000593074 GABRA1P14867 456 aa17.45■□□□□ 0.38
CLIP3-206ENST00000593074 SDHBP21912 280 aa17.45■□□□□ 0.38
CLIP3-206ENST00000593074 CLDN17P56750 224 aa17.45■□□□□ 0.38
CLIP3-206ENST00000593074 SPOCK1Q08629 439 aa17.45■□□□□ 0.38
CLIP3-206ENST00000593074 EIF3IQ13347 325 aaKnown RBP17.45■□□□□ 0.38
CLIP3-206ENST00000593074 POU4F3Q15319 338 aa17.45■□□□□ 0.38
CLIP3-206ENST00000593074 ST3GAL2Q16842 350 aa17.45■□□□□ 0.38
CLIP3-206ENST00000593074 Q5BKY6 102 aa17.45■□□□□ 0.38
CLIP3-206ENST00000593074 SLA2Q9H6Q3 261 aa17.45■□□□□ 0.38
CLIP3-206ENST00000593074 WDFY4Q6ZS81 3184 aa17.45■□□□□ 0.38
CLIP3-206ENST00000593074 PHF3Q92576 2039 aaKnown RBP17.45■□□□□ 0.38
CLIP3-206ENST00000593074 PRAF2O60831 178 aa17.44■□□□□ 0.38
CLIP3-206ENST00000593074 CBR3O75828 277 aa17.44■□□□□ 0.38
CLIP3-206ENST00000593074 RBBP9O75884 186 aa17.44■□□□□ 0.38
CLIP3-206ENST00000593074 SERPINA7P05543 415 aa17.44■□□□□ 0.38
CLIP3-206ENST00000593074 GABREP78334 506 aa17.44■□□□□ 0.38
CLIP3-206ENST00000593074 H3F3CQ6NXT2 135 aa17.44■□□□□ 0.38
CLIP3-206ENST00000593074 ADGRE4PQ86SQ3 457 aa17.44■□□□□ 0.38
CLIP3-206ENST00000593074 PHF21AQ96BD5 680 aa17.44■□□□□ 0.38
CLIP3-206ENST00000593074 UTP23Q9BRU9 249 aaKnown RBP17.44■□□□□ 0.38
CLIP3-206ENST00000593074 PNRC2Q9NPJ4 139 aaKnown RBP17.44■□□□□ 0.38
CLIP3-206ENST00000593074 TAS2R8Q9NYW2 309 aa17.44■□□□□ 0.38
CLIP3-206ENST00000593074 ASH2LQ9UBL3 628 aa17.44■□□□□ 0.38
CLIP3-206ENST00000593074 TRAV18A0A075B6X5 111 aa17.44■□□□□ 0.38
CLIP3-206ENST00000593074 DCDC2BA2VCK2 349 aa17.44■□□□□ 0.38
CLIP3-206ENST00000593074 SMLR1H3BR10 107 aa17.44■□□□□ 0.38
CLIP3-206ENST00000593074 GALR2O43603 387 aaPredicted RBP17.44■□□□□ 0.38
CLIP3-206ENST00000593074 TGM6O95932 706 aa17.44■□□□□ 0.38
CLIP3-206ENST00000593074 P04436 131 aa17.44■□□□□ 0.38
CLIP3-206ENST00000593074 B3GNTL1Q67FW5 361 aaPredicted RBP17.44■□□□□ 0.38
CLIP3-206ENST00000593074 FOXRED1Q96CU9 486 aaPredicted RBP17.44■□□□□ 0.38
CLIP3-206ENST00000593074 ATG5Q9H1Y0 275 aa17.44■□□□□ 0.38
CLIP3-206ENST00000593074 NKIRAS2Q9NYR9 191 aa17.44■□□□□ 0.38
CLIP3-206ENST00000593074 STMN3Q9NZ72 180 aa17.44■□□□□ 0.38
CLIP3-206ENST00000593074 FLVCR2Q9UPI3 526 aa17.44■□□□□ 0.38
CLIP3-206ENST00000593074 MED12Q93074 2177 aa17.44■□□□□ 0.38
CLIP3-206ENST00000593074 A0A1B0GUH1 482 aa17.43■□□□□ 0.38
CLIP3-206ENST00000593074 SYT7O43581 403 aa17.43■□□□□ 0.38
CLIP3-206ENST00000593074 VAMP5O95183 116 aa17.43■□□□□ 0.38
CLIP3-206ENST00000593074 CSF1P09603 554 aa17.43■□□□□ 0.38
CLIP3-206ENST00000593074 SULT1A3P0DMM9 295 aa17.43■□□□□ 0.38
CLIP3-206ENST00000593074 SULT1A4P0DMN0 295 aa17.43■□□□□ 0.38
CLIP3-206ENST00000593074 ANXA3P12429 323 aa17.43■□□□□ 0.38
CLIP3-206ENST00000593074 ZNF133P52736 654 aaPredicted RBP17.43■□□□□ 0.38
CLIP3-206ENST00000593074 CSNK2A1P68400 391 aaPredicted RBP17.43■□□□□ 0.38
CLIP3-206ENST00000593074 PCGF3Q3KNV8 242 aa17.43■□□□□ 0.38
CLIP3-206ENST00000593074 ACER2Q5QJU3 275 aa17.43■□□□□ 0.38
CLIP3-206ENST00000593074 FAAP20Q6NZ36 180 aa17.43■□□□□ 0.38
CLIP3-206ENST00000593074 DHRS13Q6UX07 377 aa17.43■□□□□ 0.38
CLIP3-206ENST00000593074 ZNF813Q6ZN06 617 aa17.43■□□□□ 0.38
CLIP3-206ENST00000593074 CREB3L2Q70SY1 520 aa17.43■□□□□ 0.38
CLIP3-206ENST00000593074 JAGN1Q8N5M9 183 aa17.43■□□□□ 0.38
CLIP3-206ENST00000593074 PTX4Q96A99 478 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms