RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 ZNF3P17036 446 aa13.4□□□□□ -0.26
LIG3-215ENST00000592690 SPI1P17947 270 aa13.4□□□□□ -0.26
LIG3-215ENST00000592690 COL8A2P25067 703 aa13.4□□□□□ -0.26
LIG3-215ENST00000592690 POU1F1P28069 291 aa13.4□□□□□ -0.26
LIG3-215ENST00000592690 GRK5P34947 590 aa13.4□□□□□ -0.26
LIG3-215ENST00000592690 MMP15P51511 669 aa13.4□□□□□ -0.26
LIG3-215ENST00000592690 SLC25A1P53007 311 aa13.4□□□□□ -0.26
LIG3-215ENST00000592690 CCL8P80075 99 aa13.4□□□□□ -0.26
LIG3-215ENST00000592690 RSPO1Q2MKA7 263 aaPredicted RBP13.4□□□□□ -0.26
LIG3-215ENST00000592690 ACSM5Q6NUN0 579 aa13.4□□□□□ -0.26
LIG3-215ENST00000592690 SHQ1Q6PI26 577 aaKnown RBP13.4□□□□□ -0.26
LIG3-215ENST00000592690 ASRGL1Q7L266 308 aa13.4□□□□□ -0.26
LIG3-215ENST00000592690 C1orf174Q8IYL3 243 aa13.4□□□□□ -0.26
LIG3-215ENST00000592690 OR2AJ1Q8NGZ0 328 aa13.4□□□□□ -0.26
LIG3-215ENST00000592690 YIPF5Q969M3 257 aa13.4□□□□□ -0.26
LIG3-215ENST00000592690 POM121Q96HA1 1249 aa13.4□□□□□ -0.26
LIG3-215ENST00000592690 MAP6Q96JE9 813 aa13.4□□□□□ -0.26
LIG3-215ENST00000592690 CDADC1Q9BWV3 514 aa13.4□□□□□ -0.26
LIG3-215ENST00000592690 HCAR1Q9BXC0 346 aa13.4□□□□□ -0.26
LIG3-215ENST00000592690 MED20Q9H944 212 aa13.4□□□□□ -0.26
LIG3-215ENST00000592690 WDR76Q9H967 626 aa13.4□□□□□ -0.26
LIG3-215ENST00000592690 STARD10Q9Y365 291 aa13.4□□□□□ -0.26
LIG3-215ENST00000592690 COMMD3-BMI1R4GMX3 469 aa13.4□□□□□ -0.26
LIG3-215ENST00000592690 DYSFO75923 2080 aa13.4□□□□□ -0.27
LIG3-215ENST00000592690 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.39□□□□□ -0.27
LIG3-215ENST00000592690 SONP18583 2426 aaKnown RBP13.39□□□□□ -0.27
LIG3-215ENST00000592690 OSMP13725 252 aa13.39□□□□□ -0.27
LIG3-215ENST00000592690 ZNF823P16415 610 aa13.39□□□□□ -0.27
LIG3-215ENST00000592690 PSG7Q13046 419 aa13.39□□□□□ -0.27
LIG3-215ENST00000592690 RIN1Q13671 783 aa13.39□□□□□ -0.27
LIG3-215ENST00000592690 GINS1Q14691 196 aa13.39□□□□□ -0.27
LIG3-215ENST00000592690 ATP6AP1Q15904 470 aa13.39□□□□□ -0.27
LIG3-215ENST00000592690 MOGQ16653 247 aa13.39□□□□□ -0.27
LIG3-215ENST00000592690 KRTAP27-1Q3LI81 207 aa13.39□□□□□ -0.27
LIG3-215ENST00000592690 LINC01590Q5TEZ4 76 aa13.39□□□□□ -0.27
LIG3-215ENST00000592690 SLC27A4Q6P1M0 643 aa13.39□□□□□ -0.27
LIG3-215ENST00000592690 ATG16L2Q8NAA4 619 aa13.39□□□□□ -0.27
LIG3-215ENST00000592690 ZNF511Q8NB15 262 aa13.39□□□□□ -0.27
LIG3-215ENST00000592690 OR10S1Q8NGN2 331 aa13.39□□□□□ -0.27
LIG3-215ENST00000592690 NRBF2Q96F24 287 aa13.39□□□□□ -0.27
LIG3-215ENST00000592690 DCLRE1CQ96SD1 692 aaKnown RBP13.39□□□□□ -0.27
LIG3-215ENST00000592690 PITX2Q99697 317 aa13.39□□□□□ -0.27
LIG3-215ENST00000592690 ATF6BQ99941 703 aa13.39□□□□□ -0.27
LIG3-215ENST00000592690 ZNF556Q9HAH1 456 aa13.39□□□□□ -0.27
LIG3-215ENST00000592690 KCNG2Q9UJ96 466 aa13.39□□□□□ -0.27
LIG3-215ENST00000592690 IGHV1-46P01743 117 aa13.38□□□□□ -0.27
LIG3-215ENST00000592690 MT-ND5P03915 603 aa13.38□□□□□ -0.27
LIG3-215ENST00000592690 IGHV4-31P0DP07 118 aa13.38□□□□□ -0.27
LIG3-215ENST00000592690 FMO3P31513 532 aa13.38□□□□□ -0.27
LIG3-215ENST00000592690 ZNF81P51508 661 aa13.38□□□□□ -0.27
LIG3-215ENST00000592690 TRIP10Q15642 601 aa13.38□□□□□ -0.27
LIG3-215ENST00000592690 TSTQ16762 297 aaKnown RBP13.38□□□□□ -0.27
LIG3-215ENST00000592690 PCGF3Q3KNV8 242 aa13.38□□□□□ -0.27
LIG3-215ENST00000592690 CCDC121Q6ZUS5 278 aa13.38□□□□□ -0.27
LIG3-215ENST00000592690 OR6K6Q8NGW6 343 aa13.38□□□□□ -0.27
LIG3-215ENST00000592690 OR5K1Q8NHB7 308 aa13.38□□□□□ -0.27
LIG3-215ENST00000592690 RDH5Q92781 318 aa13.38□□□□□ -0.27
LIG3-215ENST00000592690 CMBLQ96DG6 245 aa13.38□□□□□ -0.27
LIG3-215ENST00000592690 DUS3LQ96G46 650 aaKnown RBP13.38□□□□□ -0.27
LIG3-215ENST00000592690 MSL2Q9HCI7 577 aa13.38□□□□□ -0.27
LIG3-215ENST00000592690 NKIRAS2Q9NYR9 191 aa13.38□□□□□ -0.27
LIG3-215ENST00000592690 PTTG3PQ9NZH4 202 aa13.38□□□□□ -0.27
LIG3-215ENST00000592690 KIF17Q9P2E2 1029 aa13.38□□□□□ -0.27
LIG3-215ENST00000592690 AP4S1Q9Y587 144 aa13.38□□□□□ -0.27
LIG3-215ENST00000592690 ANK3Q12955 4377 aaKnown RBP13.38□□□□□ -0.27
LIG3-215ENST00000592690 PLSCR5A0PG75 271 aa13.37□□□□□ -0.27
LIG3-215ENST00000592690 LRP5LA4QPB2 252 aa13.37□□□□□ -0.27
LIG3-215ENST00000592690 F5H5K5 113 aa13.37□□□□□ -0.27
LIG3-215ENST00000592690 SPRY3O43610 288 aa13.37□□□□□ -0.27
LIG3-215ENST00000592690 TIMM8AO60220 97 aaPredicted RBP13.37□□□□□ -0.27
LIG3-215ENST00000592690 CDC14BO60729 498 aa13.37□□□□□ -0.27
LIG3-215ENST00000592690 LILRA1O75019 489 aa13.37□□□□□ -0.27
LIG3-215ENST00000592690 RP2O75695 350 aa13.37□□□□□ -0.27
LIG3-215ENST00000592690 CIB2O75838 187 aa13.37□□□□□ -0.27
LIG3-215ENST00000592690 SPARCP09486 303 aa13.37□□□□□ -0.27
LIG3-215ENST00000592690 ACSM4P0C7M7 580 aa13.37□□□□□ -0.27
LIG3-215ENST00000592690 ZNF16P17020 682 aaPredicted RBP13.37□□□□□ -0.27
LIG3-215ENST00000592690 ACHEP22303 614 aa13.37□□□□□ -0.27
LIG3-215ENST00000592690 RGS6P49758 472 aa13.37□□□□□ -0.27
LIG3-215ENST00000592690 ENTPD1P49961 510 aa13.37□□□□□ -0.27
LIG3-215ENST00000592690 DAPP51397 102 aa13.37□□□□□ -0.27
LIG3-215ENST00000592690 CDK5Q00535 292 aa13.37□□□□□ -0.27
LIG3-215ENST00000592690 HLXQ14774 488 aaPredicted RBP13.37□□□□□ -0.27
LIG3-215ENST00000592690 TMEM236Q5W0B7 351 aa13.37□□□□□ -0.27
LIG3-215ENST00000592690 FAHD1Q6P587 224 aa13.37□□□□□ -0.27
LIG3-215ENST00000592690 NAA40Q86UY6 237 aa13.37□□□□□ -0.27
LIG3-215ENST00000592690 ZNF540Q8NDQ6 660 aa13.37□□□□□ -0.27
LIG3-215ENST00000592690 PTP4A1Q93096 173 aa13.37□□□□□ -0.27
LIG3-215ENST00000592690 APOBEC3DQ96AK3 386 aaPredicted RBP13.37□□□□□ -0.27
LIG3-215ENST00000592690 OTULINQ96BN8 352 aa13.37□□□□□ -0.27
LIG3-215ENST00000592690 CHODLQ9H9P2 273 aa13.37□□□□□ -0.27
LIG3-215ENST00000592690 YAE1D1Q9NRH1 226 aa13.37□□□□□ -0.27
LIG3-215ENST00000592690 PAPOLBQ9NRJ5 636 aaKnown RBP13.37□□□□□ -0.27
LIG3-215ENST00000592690 ZNF275Q9NSD4 429 aaPredicted RBP13.37□□□□□ -0.27
LIG3-215ENST00000592690 PURGQ9UJV8 347 aaKnown RBP13.37□□□□□ -0.27
LIG3-215ENST00000592690 J3QW42 95 aa13.36□□□□□ -0.27
LIG3-215ENST00000592690 SURF4O15260 269 aa13.36□□□□□ -0.27
LIG3-215ENST00000592690 TPD52L2O43399 206 aaKnown RBP13.36□□□□□ -0.27
LIG3-215ENST00000592690 ZNF23P17027 643 aa13.36□□□□□ -0.27
LIG3-215ENST00000592690 KITLGP21583 273 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms