RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 OR2T4Q8NH00 348 aa12.64□□□□□ -0.39
SS18-212ENST00000579061 SLC7A6Q92536 515 aa12.64□□□□□ -0.39
SS18-212ENST00000579061 PTP4A1Q93096 173 aa12.64□□□□□ -0.39
SS18-212ENST00000579061 C1orf159Q96HA4 380 aa12.64□□□□□ -0.39
SS18-212ENST00000579061 CDADC1Q9BWV3 514 aa12.64□□□□□ -0.39
SS18-212ENST00000579061 FN3KQ9H479 309 aa12.64□□□□□ -0.39
SS18-212ENST00000579061 LPAR3Q9UBY5 353 aa12.64□□□□□ -0.39
SS18-212ENST00000579061 CYB5R1Q9UHQ9 305 aa12.64□□□□□ -0.39
SS18-212ENST00000579061 CDC42EP3Q9UKI2 254 aa12.64□□□□□ -0.39
SS18-212ENST00000579061 KCNS2Q9ULS6 477 aa12.64□□□□□ -0.39
SS18-212ENST00000579061 POMPQ9Y244 141 aa12.64□□□□□ -0.39
SS18-212ENST00000579061 STARD10Q9Y365 291 aa12.64□□□□□ -0.39
SS18-212ENST00000579061 IGHV1-69-2A0A0G2JMI3 117 aa12.63□□□□□ -0.39
SS18-212ENST00000579061 LOC100289279A0A1B0GTE1 492 aa12.63□□□□□ -0.39
SS18-212ENST00000579061 TCRBV3S1A0A5B6 114 aa12.63□□□□□ -0.39
SS18-212ENST00000579061 LRP5LA4QPB2 252 aa12.63□□□□□ -0.39
SS18-212ENST00000579061 GNGT2O14610 69 aa12.63□□□□□ -0.39
SS18-212ENST00000579061 IGHV1-46P01743 117 aa12.63□□□□□ -0.39
SS18-212ENST00000579061 CD55P08174 381 aa12.63□□□□□ -0.39
SS18-212ENST00000579061 RAC2P15153 192 aa12.63□□□□□ -0.39
SS18-212ENST00000579061 GGT2P36268 569 aa12.63□□□□□ -0.39
SS18-212ENST00000579061 RASSF2P50749 326 aa12.63□□□□□ -0.39
SS18-212ENST00000579061 TRIP10Q15642 601 aa12.63□□□□□ -0.39
SS18-212ENST00000579061 KRTAP27-1Q3LI81 207 aa12.63□□□□□ -0.39
SS18-212ENST00000579061 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.63□□□□□ -0.39
SS18-212ENST00000579061 CYB561A3Q8NBI2 242 aa12.63□□□□□ -0.39
SS18-212ENST00000579061 SLC37A3Q8NCC5 494 aa12.63□□□□□ -0.39
SS18-212ENST00000579061 PAPD5Q8NDF8 572 aaKnown RBP12.63□□□□□ -0.39
SS18-212ENST00000579061 GTF3AQ92664 365 aaKnown RBP12.63□□□□□ -0.39
SS18-212ENST00000579061 APOBEC3DQ96AK3 386 aaPredicted RBP12.63□□□□□ -0.39
SS18-212ENST00000579061 HAVCR1Q96D42 359 aa12.63□□□□□ -0.39
SS18-212ENST00000579061 CMBLQ96DG6 245 aa12.63□□□□□ -0.39
SS18-212ENST00000579061 ELMOD3Q96FG2 381 aa12.63□□□□□ -0.39
SS18-212ENST00000579061 FEVQ99581 238 aa12.63□□□□□ -0.39
SS18-212ENST00000579061 RBM4Q9BWF3 364 aaKnown RBP12.63□□□□□ -0.39
SS18-212ENST00000579061 EGLN1Q9GZT9 426 aa12.63□□□□□ -0.39
SS18-212ENST00000579061 SAP30LQ9HAJ7 183 aa12.63□□□□□ -0.39
SS18-212ENST00000579061 MRPL22Q9NWU5 206 aaKnown RBP12.63□□□□□ -0.39
SS18-212ENST00000579061 PURGQ9UJV8 347 aaKnown RBP12.63□□□□□ -0.39
SS18-212ENST00000579061 ZSCAN5BA6NJL1 495 aa12.62□□□□□ -0.39
SS18-212ENST00000579061 GSC2O15499 205 aa12.62□□□□□ -0.39
SS18-212ENST00000579061 TPD52L2O43399 206 aaKnown RBP12.62□□□□□ -0.39
SS18-212ENST00000579061 PPIHO43447 177 aaKnown RBP12.62□□□□□ -0.39
SS18-212ENST00000579061 TIMM8AO60220 97 aaPredicted RBP12.62□□□□□ -0.39
SS18-212ENST00000579061 ATP5HO75947 161 aa12.62□□□□□ -0.39
SS18-212ENST00000579061 SOX14O95416 240 aa12.62□□□□□ -0.39
SS18-212ENST00000579061 IFNGP01579 166 aa12.62□□□□□ -0.39
SS18-212ENST00000579061 HLA-DQA2P01906 255 aa12.62□□□□□ -0.39
SS18-212ENST00000579061 DBHP09172 617 aa12.62□□□□□ -0.39
SS18-212ENST00000579061 ZNF823P16415 610 aa12.62□□□□□ -0.39
SS18-212ENST00000579061 SLC25A1P53007 311 aa12.62□□□□□ -0.39
SS18-212ENST00000579061 CDK5R2Q13319 367 aa12.62□□□□□ -0.39
SS18-212ENST00000579061 TSTQ16762 297 aaKnown RBP12.62□□□□□ -0.39
SS18-212ENST00000579061 CORO6Q6QEF8 472 aa12.62□□□□□ -0.39
SS18-212ENST00000579061 FBXW12Q6X9E4 464 aa12.62□□□□□ -0.39
SS18-212ENST00000579061 CFAP77Q6ZQR2 320 aa12.62□□□□□ -0.39
SS18-212ENST00000579061 USP51Q70EK9 711 aa12.62□□□□□ -0.39
SS18-212ENST00000579061 SPATA24Q86W54 205 aa12.62□□□□□ -0.39
SS18-212ENST00000579061 LINC00346Q8IVM7 164 aa12.62□□□□□ -0.39
SS18-212ENST00000579061 LINC01356Q8N9X3 169 aa12.62□□□□□ -0.39
SS18-212ENST00000579061 PROKR2Q8NFJ6 384 aa12.62□□□□□ -0.39
SS18-212ENST00000579061 OR4Q3Q8NH05 313 aa12.62□□□□□ -0.39
SS18-212ENST00000579061 ATF6BQ99941 703 aa12.62□□□□□ -0.39
SS18-212ENST00000579061 NIPSNAP1Q9BPW8 284 aa12.62□□□□□ -0.39
SS18-212ENST00000579061 CADM1Q9BY67 442 aaKnown RBP12.62□□□□□ -0.39
SS18-212ENST00000579061 NMNAT2Q9BZQ4 307 aa12.62□□□□□ -0.39
SS18-212ENST00000579061 POFUT1Q9H488 388 aa12.62□□□□□ -0.39
SS18-212ENST00000579061 SPRY3O43610 288 aa12.61□□□□□ -0.39
SS18-212ENST00000579061 CDC14BO60729 498 aa12.61□□□□□ -0.39
SS18-212ENST00000579061 TGFAP01135 160 aa12.61□□□□□ -0.39
SS18-212ENST00000579061 IL2RGP31785 369 aa12.61□□□□□ -0.39
SS18-212ENST00000579061 PYCR1P32322 319 aa12.61□□□□□ -0.39
SS18-212ENST00000579061 GRK5P34947 590 aa12.61□□□□□ -0.39
SS18-212ENST00000579061 BLVRAP53004 296 aa12.61□□□□□ -0.39
SS18-212ENST00000579061 CDH15P55291 814 aa12.61□□□□□ -0.39
SS18-212ENST00000579061 SLC3A1Q07837 685 aa12.61□□□□□ -0.39
SS18-212ENST00000579061 CRMP1Q14194 572 aa12.61□□□□□ -0.39
SS18-212ENST00000579061 RSPO1Q2MKA7 263 aaPredicted RBP12.61□□□□□ -0.39
SS18-212ENST00000579061 HFEQ30201 348 aa12.61□□□□□ -0.39
SS18-212ENST00000579061 COLCA1Q6ZS62 124 aa12.61□□□□□ -0.39
SS18-212ENST00000579061 TMEM179BQ7Z7N9 219 aa12.61□□□□□ -0.39
SS18-212ENST00000579061 CLDND2Q8NHS1 167 aa12.61□□□□□ -0.39
SS18-212ENST00000579061 TEX47Q8TBZ9 253 aa12.61□□□□□ -0.39
SS18-212ENST00000579061 PITX2Q99697 317 aa12.61□□□□□ -0.39
SS18-212ENST00000579061 SOX7Q9BT81 388 aa12.61□□□□□ -0.39
SS18-212ENST00000579061 C1QTNF5Q9BXJ0 243 aa12.61□□□□□ -0.39
SS18-212ENST00000579061 SHARPINQ9H0F6 387 aa12.61□□□□□ -0.39
SS18-212ENST00000579061 MSL2Q9HCI7 577 aa12.61□□□□□ -0.39
SS18-212ENST00000579061 PNRC2Q9NPJ4 139 aaKnown RBP12.61□□□□□ -0.39
SS18-212ENST00000579061 CMC2Q9NRP2 79 aa12.61□□□□□ -0.39
SS18-212ENST00000579061 ARMC1Q9NVT9 282 aa12.61□□□□□ -0.39
SS18-212ENST00000579061 PDP1Q9P0J1 537 aaPredicted RBP12.61□□□□□ -0.39
SS18-212ENST00000579061 DNAJB9Q9UBS3 223 aa12.61□□□□□ -0.39
SS18-212ENST00000579061 DYSFO75923 2080 aa12.61□□□□□ -0.39
SS18-212ENST00000579061 RIIAD1A6NNX1 92 aa12.6□□□□□ -0.39
SS18-212ENST00000579061 CLDN25C9JDP6 229 aa12.6□□□□□ -0.39
SS18-212ENST00000579061 FKBP6O75344 327 aa12.6□□□□□ -0.39
SS18-212ENST00000579061 E2F6O75461 281 aa12.6□□□□□ -0.39
SS18-212ENST00000579061 FAM157CP0CG43 387 aa12.6□□□□□ -0.39
SS18-212ENST00000579061 ANXA8P13928 327 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms