RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 PTHLHP12272 177 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 ZNF43P17038 809 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 ANXA7P20073 488 aaKnown RBP5.56□□□□□ -1.52
CLN3-223ENST00000566472 RAB3AP20336 220 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 CTSSP25774 331 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 SELENOPP49908 381 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 ZNF81P51508 661 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 DSCR4P56555 118 aaPredicted RBP5.56□□□□□ -1.52
CLN3-223ENST00000566472 CLDN6P56747 220 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 TSPAN5P62079 268 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 LSM6P62312 80 aaKnown RBP5.56□□□□□ -1.52
CLN3-223ENST00000566472 MC2RQ01718 297 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 ZFP36L1Q07352 338 aaKnown RBP5.56□□□□□ -1.52
CLN3-223ENST00000566472 LGALSLQ3ZCW2 172 aaPredicted RBP5.56□□□□□ -1.52
CLN3-223ENST00000566472 CLLU1Q5K131 121 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 GLYATL3Q5SZD4 288 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 C10orf128Q5T292 105 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 C6orf183Q5T699 404 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 LPCAT3Q6P1A2 487 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 ZNF813Q6ZN06 617 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 TMPPEQ6ZT21 453 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 PGAP1Q75T13 922 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 BIVMQ86UB2 503 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 LINC00346Q8IVM7 164 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 KDM8Q8N371 416 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 FTMTQ8N4E7 242 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 JAGN1Q8N5M9 183 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 WDSUB1Q8N9V3 476 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 DTWD2Q8NBA8 298 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 ZNF680Q8NEM1 530 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 BEST4Q8NFU0 473 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 OR51A2Q8NGJ7 313 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 OR5D14Q8NGL3 314 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 OR10S1Q8NGN2 331 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 ANGPTL6Q8NI99 470 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 THAP3Q8WTV1 239 aaPredicted RBP5.56□□□□□ -1.52
CLN3-223ENST00000566472 AQP3Q92482 292 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 TMEM54Q969K7 222 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 PPP1R14AQ96A00 147 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 PNPLA2Q96AD5 504 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 INTS12Q96CB8 462 aaKnown RBP5.56□□□□□ -1.52
CLN3-223ENST00000566472 SEH1LQ96EE3 360 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 DNAJA3Q96EY1 480 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 MS4A3Q96HJ5 214 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 TMEM41AQ96HV5 264 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 OR5B2Q96R09 309 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 NAA11Q9BSU3 229 aaPredicted RBP5.56□□□□□ -1.52
CLN3-223ENST00000566472 EDEM2Q9BV94 578 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 GAREM1Q9H706 876 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 CENPMQ9NSP4 180 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 OCIAD1Q9NX40 245 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 EIF3KQ9UBQ5 218 aaKnown RBP5.56□□□□□ -1.52
CLN3-223ENST00000566472 CGGBP1Q9UFW8 167 aaPredicted RBP5.56□□□□□ -1.52
CLN3-223ENST00000566472 UBQLN2Q9UHD9 624 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 GDF2Q9UK05 429 aaPredicted RBP5.56□□□□□ -1.52
CLN3-223ENST00000566472 SLC5A6Q9Y289 635 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 POLR1DQ9Y2S0 133 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 HRH3Q9Y5N1 445 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 MRPS18BQ9Y676 258 aaKnown RBP5.56□□□□□ -1.52
CLN3-223ENST00000566472 LHFPL6Q9Y693 200 aa5.56□□□□□ -1.52
CLN3-223ENST00000566472 HEATR5AQ86XA9 2040 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 SCN2AQ99250 2005 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 TP53BP1Q12888 1972 aaPredicted RBP5.55□□□□□ -1.52
CLN3-223ENST00000566472 ADAMTS9Q9P2N4 1935 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 A0A1B0GTI1 187 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 PLSCR5A0PG75 271 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 TMEM82A0PJX8 343 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 GJE1A6NN92 205 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 TMEM14DPA8MWL7 114 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 ZNF736B4DX44 427 aaPredicted RBP5.55□□□□□ -1.52
CLN3-223ENST00000566472 B4E171 279 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 F5H5P2 479 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 SULT2B1O00204 365 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 TSC22D2O75157 780 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 CYB5AP00167 134 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 APOC1P02654 83 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 CD3DP04234 171 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 GP1BAP07359 652 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 UMODP07911 640 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 CHRM2P08172 466 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 COX6A1P12074 109 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 LIFP15018 202 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 ZNF20P17024 532 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 TSPAN7P41732 249 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 OR3A3P47888 321 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 SSR4P51571 173 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 SUCLG1P53597 346 aaKnown RBP5.55□□□□□ -1.52
CLN3-223ENST00000566472 FOXL2P58012 376 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 MLF1P58340 268 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 CSNK2A1P68400 391 aaPredicted RBP5.55□□□□□ -1.52
CLN3-223ENST00000566472 GABREP78334 506 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 QRFPP83859 136 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 GUCA2AQ02747 115 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 SRSF4Q08170 494 aaKnown RBP5.55□□□□□ -1.52
CLN3-223ENST00000566472 SPOCK1Q08629 439 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 OPCMLQ14982 345 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 TAF13Q15543 124 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 CSRP2Q16527 193 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 ZNF260Q3ZCT1 412 aa5.55□□□□□ -1.52
CLN3-223ENST00000566472 ACTBL2Q562R1 376 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms