RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 GJC3Q8NFK1 279 aa15.61■□□□□ 0.09
CLN3-214ENST00000565140 OR52L1Q8NGH7 329 aa15.61■□□□□ 0.09
CLN3-214ENST00000565140 BCAS4Q8TDM0 211 aa15.61■□□□□ 0.09
CLN3-214ENST00000565140 ZNRF4Q8WWF5 429 aa15.61■□□□□ 0.09
CLN3-214ENST00000565140 CYSLTR2Q9NS75 346 aa15.61■□□□□ 0.09
CLN3-214ENST00000565140 MRPL22Q9NWU5 206 aaKnown RBP15.61■□□□□ 0.09
CLN3-214ENST00000565140 LPAR3Q9UBY5 353 aa15.61■□□□□ 0.09
CLN3-214ENST00000565140 SAMHD1Q9Y3Z3 626 aaKnown RBP15.61■□□□□ 0.09
CLN3-214ENST00000565140 STAB1Q9NY15 2570 aa15.6■□□□□ 0.09
CLN3-214ENST00000565140 UBOX5O94941 541 aa15.6■□□□□ 0.09
CLN3-214ENST00000565140 ADH4P08319 380 aa15.6■□□□□ 0.09
CLN3-214ENST00000565140 RAP2AP10114 183 aa15.6■□□□□ 0.09
CLN3-214ENST00000565140 GSTM3P21266 225 aa15.6■□□□□ 0.09
CLN3-214ENST00000565140 KITLGP21583 273 aa15.6■□□□□ 0.09
CLN3-214ENST00000565140 TUBG1P23258 451 aa15.6■□□□□ 0.09
CLN3-214ENST00000565140 PYCR1P32322 319 aa15.6■□□□□ 0.09
CLN3-214ENST00000565140 GGT2P36268 569 aa15.6■□□□□ 0.09
CLN3-214ENST00000565140 LIPAP38571 399 aa15.6■□□□□ 0.09
CLN3-214ENST00000565140 ERFP50548 548 aa15.6■□□□□ 0.09
CLN3-214ENST00000565140 LMO4P61968 165 aa15.6■□□□□ 0.09
CLN3-214ENST00000565140 MVKQ03426 396 aa15.6■□□□□ 0.09
CLN3-214ENST00000565140 CDK5R2Q13319 367 aa15.6■□□□□ 0.09
CLN3-214ENST00000565140 CR1LQ2VPA4 569 aa15.6■□□□□ 0.09
CLN3-214ENST00000565140 AVPI1Q5T686 147 aa15.6■□□□□ 0.09
CLN3-214ENST00000565140 SLC18B1Q6NT16 456 aa15.6■□□□□ 0.09
CLN3-214ENST00000565140 RPL13AP3Q6NVV1 102 aa15.6■□□□□ 0.09
CLN3-214ENST00000565140 PGM2L1Q6PCE3 622 aa15.6■□□□□ 0.09
CLN3-214ENST00000565140 CFAP77Q6ZQR2 320 aa15.6■□□□□ 0.09
CLN3-214ENST00000565140 Q6ZR03 302 aa15.6■□□□□ 0.09
CLN3-214ENST00000565140 ADGRG5Q8IZF4 528 aa15.6■□□□□ 0.09
CLN3-214ENST00000565140 HAVCR1Q96D42 359 aa15.6■□□□□ 0.09
CLN3-214ENST00000565140 LRGUKQ96M69 825 aa15.6■□□□□ 0.09
CLN3-214ENST00000565140 REEP1Q9H902 201 aa15.6■□□□□ 0.09
CLN3-214ENST00000565140 TUBG2Q9NRH3 451 aa15.6■□□□□ 0.09
CLN3-214ENST00000565140 CYB5R1Q9UHQ9 305 aa15.6■□□□□ 0.09
CLN3-214ENST00000565140 ATPIF1Q9UII2 106 aa15.6■□□□□ 0.09
CLN3-214ENST00000565140 PURGQ9UJV8 347 aaKnown RBP15.6■□□□□ 0.09
CLN3-214ENST00000565140 ZDHHC8Q9ULC8 765 aa15.6■□□□□ 0.09
CLN3-214ENST00000565140 DNHD1Q96M86 4753 aa15.6■□□□□ 0.09
CLN3-214ENST00000565140 IFNA2P01563 188 aa15.59■□□□□ 0.09
CLN3-214ENST00000565140 HLA-DQA2P01906 255 aa15.59■□□□□ 0.09
CLN3-214ENST00000565140 RBMXP38159 391 aaKnown RBP15.59■□□□□ 0.09
CLN3-214ENST00000565140 TRAP1Q12931 704 aaKnown RBP15.59■□□□□ 0.09
CLN3-214ENST00000565140 HLXQ14774 488 aaPredicted RBP15.59■□□□□ 0.09
CLN3-214ENST00000565140 HFEQ30201 348 aa15.59■□□□□ 0.09
CLN3-214ENST00000565140 OR4Q3Q8NH05 313 aa15.59■□□□□ 0.09
CLN3-214ENST00000565140 PTP4A1Q93096 173 aa15.59■□□□□ 0.09
CLN3-214ENST00000565140 DCLRE1CQ96SD1 692 aaKnown RBP15.59■□□□□ 0.09
CLN3-214ENST00000565140 COQ7Q99807 217 aa15.59■□□□□ 0.09
CLN3-214ENST00000565140 CHID1Q9BWS9 393 aa15.59■□□□□ 0.09
CLN3-214ENST00000565140 TSSK6Q9BXA6 273 aa15.59■□□□□ 0.09
CLN3-214ENST00000565140 DGCR6LQ9BY27 220 aa15.59■□□□□ 0.09
CLN3-214ENST00000565140 HDHD2Q9H0R4 259 aa15.59■□□□□ 0.09
CLN3-214ENST00000565140 CGGBP1Q9UFW8 167 aaPredicted RBP15.59■□□□□ 0.09
CLN3-214ENST00000565140 B4DSR2 109 aa15.58■□□□□ 0.08
CLN3-214ENST00000565140 SOX14O95416 240 aa15.58■□□□□ 0.08
CLN3-214ENST00000565140 CD55P08174 381 aa15.58■□□□□ 0.08
CLN3-214ENST00000565140 KRTAP27-1Q3LI81 207 aa15.58■□□□□ 0.08
CLN3-214ENST00000565140 SLC36A3Q495N2 470 aa15.58■□□□□ 0.08
CLN3-214ENST00000565140 LYPD4Q6UWN0 246 aa15.58■□□□□ 0.08
CLN3-214ENST00000565140 LNX2Q8N448 690 aa15.58■□□□□ 0.08
CLN3-214ENST00000565140 SLC37A3Q8NCC5 494 aa15.58■□□□□ 0.08
CLN3-214ENST00000565140 OR51L1Q8NGJ5 315 aa15.58■□□□□ 0.08
CLN3-214ENST00000565140 CANT1Q8WVQ1 401 aa15.58■□□□□ 0.08
CLN3-214ENST00000565140 CCL17Q92583 94 aa15.58■□□□□ 0.08
CLN3-214ENST00000565140 POP5Q969H6 163 aaKnown RBP15.58■□□□□ 0.08
CLN3-214ENST00000565140 SLC7A6OSQ96CW6 309 aaPredicted RBP15.58■□□□□ 0.08
CLN3-214ENST00000565140 ELMOD3Q96FG2 381 aa15.58■□□□□ 0.08
CLN3-214ENST00000565140 COG8Q96MW5 612 aa15.58■□□□□ 0.08
CLN3-214ENST00000565140 NIPSNAP1Q9BPW8 284 aa15.58■□□□□ 0.08
CLN3-214ENST00000565140 CDADC1Q9BWV3 514 aa15.58■□□□□ 0.08
CLN3-214ENST00000565140 EGLN1Q9GZT9 426 aa15.58■□□□□ 0.08
CLN3-214ENST00000565140 PNRC2Q9NPJ4 139 aaKnown RBP15.58■□□□□ 0.08
CLN3-214ENST00000565140 TBC1D23Q9NUY8 699 aa15.58■□□□□ 0.08
CLN3-214ENST00000565140 ARMC1Q9NVT9 282 aa15.58■□□□□ 0.08
CLN3-214ENST00000565140 PTTG3PQ9NZH4 202 aa15.58■□□□□ 0.08
CLN3-214ENST00000565140 WIPI2Q9Y4P8 454 aa15.58■□□□□ 0.08
CLN3-214ENST00000565140 TVP23AA6NH52 213 aa15.57■□□□□ 0.08
CLN3-214ENST00000565140 CST1P01037 141 aa15.57■□□□□ 0.08
CLN3-214ENST00000565140 PSKH1P11801 424 aa15.57■□□□□ 0.08
CLN3-214ENST00000565140 SRD5A1P18405 259 aa15.57■□□□□ 0.08
CLN3-214ENST00000565140 TNFAIP6P98066 277 aaPredicted RBP15.57■□□□□ 0.08
CLN3-214ENST00000565140 TMEM179BQ7Z7N9 219 aa15.57■□□□□ 0.08
CLN3-214ENST00000565140 NAA40Q86UY6 237 aa15.57■□□□□ 0.08
CLN3-214ENST00000565140 OR9Q1Q8NGQ5 310 aa15.57■□□□□ 0.08
CLN3-214ENST00000565140 OR2AJ1Q8NGZ0 328 aa15.57■□□□□ 0.08
CLN3-214ENST00000565140 APOBEC3DQ96AK3 386 aaPredicted RBP15.57■□□□□ 0.08
CLN3-214ENST00000565140 MAP6Q96JE9 813 aa15.57■□□□□ 0.08
CLN3-214ENST00000565140 DIRC2Q96SL1 478 aa15.57■□□□□ 0.08
CLN3-214ENST00000565140 PITX2Q99697 317 aa15.57■□□□□ 0.08
CLN3-214ENST00000565140 RBM4Q9BWF3 364 aaKnown RBP15.57■□□□□ 0.08
CLN3-214ENST00000565140 LPAR2Q9HBW0 351 aa15.57■□□□□ 0.08
CLN3-214ENST00000565140 DCAF16Q9NXF7 216 aa15.57■□□□□ 0.08
CLN3-214ENST00000565140 TMEFF2Q9UIK5 374 aaPredicted RBP15.57■□□□□ 0.08
CLN3-214ENST00000565140 AQP12BA6NM10 295 aa15.56■□□□□ 0.08
CLN3-214ENST00000565140 CLDN25C9JDP6 229 aa15.56■□□□□ 0.08
CLN3-214ENST00000565140 J3QW42 95 aa15.56■□□□□ 0.08
CLN3-214ENST00000565140 GYG2O15488 501 aa15.56■□□□□ 0.08
CLN3-214ENST00000565140 ACSM4P0C7M7 580 aa15.56■□□□□ 0.08
CLN3-214ENST00000565140 RAC2P15153 192 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms