RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 B2RBV5 119 aa12.57□□□□□ -0.4
CLN3-213ENST00000565047 CLDN25C9JDP6 229 aa12.57□□□□□ -0.4
CLN3-213ENST00000565047 J3QW42 95 aa12.57□□□□□ -0.4
CLN3-213ENST00000565047 GASTP01350 101 aa12.57□□□□□ -0.4
CLN3-213ENST00000565047 LCN8Q6JVE9 175 aa12.57□□□□□ -0.4
CLN3-213ENST00000565047 PGM2L1Q6PCE3 622 aa12.57□□□□□ -0.4
CLN3-213ENST00000565047 CORO6Q6QEF8 472 aa12.57□□□□□ -0.4
CLN3-213ENST00000565047 RINLQ6ZS11 566 aa12.57□□□□□ -0.4
CLN3-213ENST00000565047 GJC3Q8NFK1 279 aa12.57□□□□□ -0.4
CLN3-213ENST00000565047 OR9Q2Q8NGE9 314 aa12.57□□□□□ -0.4
CLN3-213ENST00000565047 CCL17Q92583 94 aa12.57□□□□□ -0.4
CLN3-213ENST00000565047 NSL1Q96IY1 281 aa12.57□□□□□ -0.4
CLN3-213ENST00000565047 IFT27Q9BW83 186 aa12.57□□□□□ -0.4
CLN3-213ENST00000565047 PLA2G12AQ9BZM1 189 aa12.57□□□□□ -0.4
CLN3-213ENST00000565047 EGLN3Q9H6Z9 239 aa12.57□□□□□ -0.4
CLN3-213ENST00000565047 LPAR2Q9HBW0 351 aa12.57□□□□□ -0.4
CLN3-213ENST00000565047 MRPL22Q9NWU5 206 aaKnown RBP12.57□□□□□ -0.4
CLN3-213ENST00000565047 CYB5R1Q9UHQ9 305 aa12.57□□□□□ -0.4
CLN3-213ENST00000565047 TRAV20A0A0B4J274 112 aa12.56□□□□□ -0.4
CLN3-213ENST00000565047 PLPP2O43688 288 aa12.56□□□□□ -0.4
CLN3-213ENST00000565047 TIMM8AO60220 97 aaPredicted RBP12.56□□□□□ -0.4
CLN3-213ENST00000565047 FAM107AO95990 144 aa12.56□□□□□ -0.4
CLN3-213ENST00000565047 RAC2P15153 192 aa12.56□□□□□ -0.4
CLN3-213ENST00000565047 GSTM3P21266 225 aa12.56□□□□□ -0.4
CLN3-213ENST00000565047 IFNGR2P38484 337 aa12.56□□□□□ -0.4
CLN3-213ENST00000565047 MNAT1P51948 309 aa12.56□□□□□ -0.4
CLN3-213ENST00000565047 TRIM25Q14258 630 aaKnown RBP12.56□□□□□ -0.4
CLN3-213ENST00000565047 ZMAT1Q5H9K5 638 aa12.56□□□□□ -0.4
CLN3-213ENST00000565047 ACSM5Q6NUN0 579 aa12.56□□□□□ -0.4
CLN3-213ENST00000565047 DNM1P34Q6PK57 102 aa12.56□□□□□ -0.4
CLN3-213ENST00000565047 CFAP77Q6ZQR2 320 aa12.56□□□□□ -0.4
CLN3-213ENST00000565047 ARHGAP24Q8N264 748 aa12.56□□□□□ -0.4
CLN3-213ENST00000565047 ZNF283Q8N7M2 679 aa12.56□□□□□ -0.4
CLN3-213ENST00000565047 OR8D4Q8NGM9 314 aa12.56□□□□□ -0.4
CLN3-213ENST00000565047 OR51F2Q8NH61 342 aa12.56□□□□□ -0.4
CLN3-213ENST00000565047 COG8Q96MW5 612 aa12.56□□□□□ -0.4
CLN3-213ENST00000565047 SIGLEC11Q96RL6 698 aa12.56□□□□□ -0.4
CLN3-213ENST00000565047 C1QTNF5Q9BXJ0 243 aa12.56□□□□□ -0.4
CLN3-213ENST00000565047 EGLN1Q9GZT9 426 aa12.56□□□□□ -0.4
CLN3-213ENST00000565047 HDHD2Q9H0R4 259 aa12.56□□□□□ -0.4
CLN3-213ENST00000565047 FN3KQ9H479 309 aa12.56□□□□□ -0.4
CLN3-213ENST00000565047 RPRD1BQ9NQG5 326 aaKnown RBP12.56□□□□□ -0.4
CLN3-213ENST00000565047 TMCC3Q9ULS5 477 aa12.56□□□□□ -0.4
CLN3-213ENST00000565047 CDH10Q9Y6N8 788 aa12.56□□□□□ -0.4
CLN3-213ENST00000565047 TNFRSF11BO00300 401 aa12.55□□□□□ -0.4
CLN3-213ENST00000565047 TPD52L2O43399 206 aaKnown RBP12.55□□□□□ -0.4
CLN3-213ENST00000565047 IGHV2-70P01814 119 aa12.55□□□□□ -0.4
CLN3-213ENST00000565047 PSKH1P11801 424 aa12.55□□□□□ -0.4
CLN3-213ENST00000565047 PCMT1P22061 227 aa12.55□□□□□ -0.4
CLN3-213ENST00000565047 RGS6P49758 472 aa12.55□□□□□ -0.4
CLN3-213ENST00000565047 TNFAIP6P98066 277 aaPredicted RBP12.55□□□□□ -0.4
CLN3-213ENST00000565047 HLXQ14774 488 aaPredicted RBP12.55□□□□□ -0.4
CLN3-213ENST00000565047 SLC35F1Q5T1Q4 408 aa12.55□□□□□ -0.4
CLN3-213ENST00000565047 RASSF6Q6ZTQ3 369 aa12.55□□□□□ -0.4
CLN3-213ENST00000565047 NAA40Q86UY6 237 aa12.55□□□□□ -0.4
CLN3-213ENST00000565047 RFLNBQ8N5W9 214 aa12.55□□□□□ -0.4
CLN3-213ENST00000565047 SDR9C7Q8NEX9 313 aa12.55□□□□□ -0.4
CLN3-213ENST00000565047 OR52E2Q8NGJ4 325 aa12.55□□□□□ -0.4
CLN3-213ENST00000565047 OR10S1Q8NGN2 331 aa12.55□□□□□ -0.4
CLN3-213ENST00000565047 RAB1CQ92928 201 aa12.55□□□□□ -0.4
CLN3-213ENST00000565047 TMPRSS13Q9BYE2 586 aa12.55□□□□□ -0.4
CLN3-213ENST00000565047 MAGIXQ9H6Y5 334 aa12.55□□□□□ -0.4
CLN3-213ENST00000565047 FAM53CQ9NYF3 392 aa12.55□□□□□ -0.4
CLN3-213ENST00000565047 TAS2R1Q9NYW7 299 aa12.55□□□□□ -0.4
CLN3-213ENST00000565047 IL19Q9UHD0 177 aa12.55□□□□□ -0.4
CLN3-213ENST00000565047 ACOT8O14734 319 aa12.54□□□□□ -0.4
CLN3-213ENST00000565047 RENP00797 406 aa12.54□□□□□ -0.4
CLN3-213ENST00000565047 ACSM4P0C7M7 580 aa12.54□□□□□ -0.4
CLN3-213ENST00000565047 ANPEPP15144 967 aa12.54□□□□□ -0.4
CLN3-213ENST00000565047 ANOS1P23352 680 aa12.54□□□□□ -0.4
CLN3-213ENST00000565047 MXRA7P84157 204 aa12.54□□□□□ -0.4
CLN3-213ENST00000565047 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.54□□□□□ -0.4
CLN3-213ENST00000565047 PPP1R8Q12972 351 aaKnown RBP12.54□□□□□ -0.4
CLN3-213ENST00000565047 CLEC12AQ5QGZ9 265 aa12.54□□□□□ -0.4
CLN3-213ENST00000565047 JAZF1Q86VZ6 243 aa12.54□□□□□ -0.4
CLN3-213ENST00000565047 LINC00346Q8IVM7 164 aa12.54□□□□□ -0.4
CLN3-213ENST00000565047 LNX2Q8N448 690 aa12.54□□□□□ -0.4
CLN3-213ENST00000565047 LINC00471Q8N535 108 aa12.54□□□□□ -0.4
CLN3-213ENST00000565047 OR2Z1Q8NG97 314 aa12.54□□□□□ -0.4
CLN3-213ENST00000565047 APOBEC3DQ96AK3 386 aaPredicted RBP12.54□□□□□ -0.4
CLN3-213ENST00000565047 MAP6Q96JE9 813 aa12.54□□□□□ -0.4
CLN3-213ENST00000565047 C19orf24Q9BVV8 132 aa12.54□□□□□ -0.4
CLN3-213ENST00000565047 NMNAT2Q9BZQ4 307 aa12.54□□□□□ -0.4
CLN3-213ENST00000565047 MUC13Q9H3R2 512 aa12.54□□□□□ -0.4
CLN3-213ENST00000565047 TMEM106BQ9NUM4 274 aa12.54□□□□□ -0.4
CLN3-213ENST00000565047 NPTNQ9Y639 398 aa12.54□□□□□ -0.4
CLN3-213ENST00000565047 MLNRO43193 412 aa12.53□□□□□ -0.4
CLN3-213ENST00000565047 PNPP00491 289 aa12.53□□□□□ -0.4
CLN3-213ENST00000565047 CALB2P22676 271 aa12.53□□□□□ -0.4
CLN3-213ENST00000565047 ZFP36P26651 326 aaKnown RBP12.53□□□□□ -0.4
CLN3-213ENST00000565047 OTX1P32242 354 aaPredicted RBP12.53□□□□□ -0.4
CLN3-213ENST00000565047 SLC3A1Q07837 685 aa12.53□□□□□ -0.4
CLN3-213ENST00000565047 PCK2Q16822 640 aa12.53□□□□□ -0.4
CLN3-213ENST00000565047 MICAQ29983 383 aa12.53□□□□□ -0.4
CLN3-213ENST00000565047 OR2T2Q6IF00 324 aa12.53□□□□□ -0.4
CLN3-213ENST00000565047 RPL13AP3Q6NVV1 102 aa12.53□□□□□ -0.4
CLN3-213ENST00000565047 LYPD4Q6UWN0 246 aa12.53□□□□□ -0.4
CLN3-213ENST00000565047 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.53□□□□□ -0.4
CLN3-213ENST00000565047 LRRC28Q86X40 367 aaPredicted RBP12.53□□□□□ -0.4
CLN3-213ENST00000565047 OR8G5Q8NG78 346 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms