RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 NR1H4Q96RI1 486 aaPredicted RBP17.92■□□□□ 0.46
CLN3-212ENST00000564574 SPOCK3Q9BQ16 436 aa17.92■□□□□ 0.46
CLN3-212ENST00000564574 C1QTNF6Q9BXI9 259 aa17.92■□□□□ 0.46
CLN3-212ENST00000564574 PAK1IP1Q9NWT1 392 aaPredicted RBP17.92■□□□□ 0.46
CLN3-212ENST00000564574 USP9XQ93008 2570 aaPredicted RBP17.92■□□□□ 0.46
CLN3-212ENST00000564574 CYSRT1A8MQ03 144 aa17.91■□□□□ 0.46
CLN3-212ENST00000564574 SULT1C4O75897 302 aa17.91■□□□□ 0.46
CLN3-212ENST00000564574 TNFAIP8O95379 198 aa17.91■□□□□ 0.46
CLN3-212ENST00000564574 APOC1P02654 83 aa17.91■□□□□ 0.46
CLN3-212ENST00000564574 KRT8P05787 483 aa17.91■□□□□ 0.46
CLN3-212ENST00000564574 CECR9P0C854 216 aa17.91■□□□□ 0.46
CLN3-212ENST00000564574 EEF1B2P24534 225 aaKnown RBP17.91■□□□□ 0.46
CLN3-212ENST00000564574 APEX1P27695 318 aaKnown RBP17.91■□□□□ 0.46
CLN3-212ENST00000564574 KRTAP27-1Q3LI81 207 aa17.91■□□□□ 0.46
CLN3-212ENST00000564574 CDONQ4KMG0 1287 aa17.91■□□□□ 0.46
CLN3-212ENST00000564574 ALKBH2Q6NS38 261 aa17.91■□□□□ 0.46
CLN3-212ENST00000564574 MEX3BQ6ZN04 569 aaKnown RBP17.91■□□□□ 0.46
CLN3-212ENST00000564574 SSX6Q7RTT6 188 aa17.91■□□□□ 0.46
CLN3-212ENST00000564574 PRSS48Q7RTY5 328 aa17.91■□□□□ 0.46
CLN3-212ENST00000564574 POM121L2Q96KW2 1035 aa17.91■□□□□ 0.46
CLN3-212ENST00000564574 SIGLEC11Q96RL6 698 aa17.91■□□□□ 0.46
CLN3-212ENST00000564574 KCNJ15Q99712 375 aa17.91■□□□□ 0.46
CLN3-212ENST00000564574 ZNF649Q9BS31 505 aa17.91■□□□□ 0.46
CLN3-212ENST00000564574 ALG8Q9BVK2 526 aa17.91■□□□□ 0.46
CLN3-212ENST00000564574 CDCA4Q9BXL8 241 aa17.91■□□□□ 0.46
CLN3-212ENST00000564574 SLCO1C1Q9NYB5 712 aa17.91■□□□□ 0.46
CLN3-212ENST00000564574 IKZF2Q9UKS7 526 aa17.91■□□□□ 0.46
CLN3-212ENST00000564574 PRR14LQ5THK1 2151 aa17.91■□□□□ 0.46
CLN3-212ENST00000564574 HEATR1Q9H583 2144 aaKnown RBP17.9■□□□□ 0.46
CLN3-212ENST00000564574 METTL15A6NJ78 407 aa17.9■□□□□ 0.46
CLN3-212ENST00000564574 CLDN1O95832 211 aa17.9■□□□□ 0.46
CLN3-212ENST00000564574 CELA3BP08861 270 aa17.9■□□□□ 0.46
CLN3-212ENST00000564574 LIMS3P0CW19 117 aa17.9■□□□□ 0.46
CLN3-212ENST00000564574 LIMS4P0CW20 117 aa17.9■□□□□ 0.46
CLN3-212ENST00000564574 HSD11B1P28845 292 aa17.9■□□□□ 0.46
CLN3-212ENST00000564574 OTX1P32242 354 aaPredicted RBP17.9■□□□□ 0.46
CLN3-212ENST00000564574 DCTDP32321 178 aa17.9■□□□□ 0.46
CLN3-212ENST00000564574 RIDAP52758 137 aaKnown RBP17.9■□□□□ 0.46
CLN3-212ENST00000564574 BEX5Q5H9J7 111 aa17.9■□□□□ 0.46
CLN3-212ENST00000564574 ZNF684Q5T5D7 378 aa17.9■□□□□ 0.46
CLN3-212ENST00000564574 LRRN1Q6UXK5 716 aa17.9■□□□□ 0.46
CLN3-212ENST00000564574 SPATC1Q76KD6 591 aa17.9■□□□□ 0.46
CLN3-212ENST00000564574 FAM220AQ7Z4H9 259 aa17.9■□□□□ 0.46
CLN3-212ENST00000564574 LHFPL3Q86UP9 236 aa17.9■□□□□ 0.46
CLN3-212ENST00000564574 SYS1Q8N2H4 156 aa17.9■□□□□ 0.46
CLN3-212ENST00000564574 MS4A3Q96HJ5 214 aa17.9■□□□□ 0.46
CLN3-212ENST00000564574 TTTY10Q9BZA0 68 aa17.9■□□□□ 0.46
CLN3-212ENST00000564574 ESRP2Q9H6T0 727 aaKnown RBP17.9■□□□□ 0.46
CLN3-212ENST00000564574 CDH20Q9HBT6 801 aa17.9■□□□□ 0.46
CLN3-212ENST00000564574 CRIM1Q9NZV1 1036 aa17.9■□□□□ 0.46
CLN3-212ENST00000564574 ERVK-18Q9QC07 812 aa17.9■□□□□ 0.46
CLN3-212ENST00000564574 CAB39Q9Y376 341 aaPredicted RBP17.9■□□□□ 0.46
CLN3-212ENST00000564574 LRP12Q9Y561 859 aa17.9■□□□□ 0.46
CLN3-212ENST00000564574 FLNCQ14315 2725 aa17.89■□□□□ 0.45
CLN3-212ENST00000564574 LOC100509620A0A075B734 347 aa17.89■□□□□ 0.45
CLN3-212ENST00000564574 TRIM64A6NGJ6 449 aa17.89■□□□□ 0.45
CLN3-212ENST00000564574 PRR32B1ATL7 298 aa17.89■□□□□ 0.45
CLN3-212ENST00000564574 GOSR1O95249 250 aa17.89■□□□□ 0.45
CLN3-212ENST00000564574 ADRA2AP08913 450 aa17.89■□□□□ 0.45
CLN3-212ENST00000564574 TACSTD2P09758 323 aa17.89■□□□□ 0.45
CLN3-212ENST00000564574 CD40P25942 277 aa17.89■□□□□ 0.45
CLN3-212ENST00000564574 C21orf33P30042 268 aaPredicted RBP17.89■□□□□ 0.45
CLN3-212ENST00000564574 ETV1P50549 477 aa17.89■□□□□ 0.45
CLN3-212ENST00000564574 NR1H2P55055 460 aa17.89■□□□□ 0.45
CLN3-212ENST00000564574 TPTEP56180 551 aa17.89■□□□□ 0.45
CLN3-212ENST00000564574 MVKQ03426 396 aa17.89■□□□□ 0.45
CLN3-212ENST00000564574 TMPRSS11AQ6ZMR5 421 aa17.89■□□□□ 0.45
CLN3-212ENST00000564574 MYPOPQ86VE0 399 aaPredicted RBP17.89■□□□□ 0.45
CLN3-212ENST00000564574 KLHL36Q8N4N3 616 aa17.89■□□□□ 0.45
CLN3-212ENST00000564574 HAVCR2Q8TDQ0 301 aa17.89■□□□□ 0.45
CLN3-212ENST00000564574 KCNS3Q9BQ31 491 aa17.89■□□□□ 0.45
CLN3-212ENST00000564574 ELOVL3Q9HB03 270 aa17.89■□□□□ 0.45
CLN3-212ENST00000564574 MRM2Q9UI43 246 aaKnown RBP17.89■□□□□ 0.45
CLN3-212ENST00000564574 ERGIC3Q9Y282 383 aa17.89■□□□□ 0.45
CLN3-212ENST00000564574 TMEM129A0AVI4 362 aa17.88■□□□□ 0.45
CLN3-212ENST00000564574 C5orf49A4QMS7 147 aa17.88■□□□□ 0.45
CLN3-212ENST00000564574 M0R135 149 aa17.88■□□□□ 0.45
CLN3-212ENST00000564574 MYL12BO14950 172 aa17.88■□□□□ 0.45
CLN3-212ENST00000564574 CRYAAP02489 173 aa17.88■□□□□ 0.45
CLN3-212ENST00000564574 NAAAQ02083 359 aa17.88■□□□□ 0.45
CLN3-212ENST00000564574 MRPL28Q13084 256 aaKnown RBP17.88■□□□□ 0.45
CLN3-212ENST00000564574 NCMAPQ5T1S8 102 aa17.88■□□□□ 0.45
CLN3-212ENST00000564574 ARL9Q6T311 187 aa17.88■□□□□ 0.45
CLN3-212ENST00000564574 YIPF7Q8N8F6 280 aa17.88■□□□□ 0.45
CLN3-212ENST00000564574 OR52N1Q8NH53 320 aa17.88■□□□□ 0.45
CLN3-212ENST00000564574 SGCDQ92629 289 aa17.88■□□□□ 0.45
CLN3-212ENST00000564574 ZNF799Q96GE5 643 aa17.88■□□□□ 0.45
CLN3-212ENST00000564574 CCDC90BQ9GZT6 254 aa17.88■□□□□ 0.45
CLN3-212ENST00000564574 SP140LQ9H930 580 aa17.88■□□□□ 0.45
CLN3-212ENST00000564574 KCNN3Q9UGI6 736 aa17.88■□□□□ 0.45
CLN3-212ENST00000564574 ANKHD1Q8IWZ3 2542 aaKnown RBP17.87■□□□□ 0.45
CLN3-212ENST00000564574 IGHV2OR16-5A0A0B4J2B6 119 aa17.87■□□□□ 0.45
CLN3-212ENST00000564574 DPRXA6NFQ7 191 aa17.87■□□□□ 0.45
CLN3-212ENST00000564574 F5H5K5 113 aa17.87■□□□□ 0.45
CLN3-212ENST00000564574 PSMD9O00233 223 aa17.87■□□□□ 0.45
CLN3-212ENST00000564574 ICMTO60725 284 aa17.87■□□□□ 0.45
CLN3-212ENST00000564574 ABHD16AO95870 558 aa17.87■□□□□ 0.45
CLN3-212ENST00000564574 MT-ND2P03891 347 aa17.87■□□□□ 0.45
CLN3-212ENST00000564574 ZNF35P13682 527 aa17.87■□□□□ 0.45
CLN3-212ENST00000564574 RGS6P49758 472 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms