RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 WIPF3A6NGB9 483 aa12.04□□□□□ -0.48
CLK3-215ENST00000564353 NPIPB7O75200 414 aa12.04□□□□□ -0.48
CLK3-215ENST00000564353 H2BFMP0C1H6 154 aa12.04□□□□□ -0.48
CLK3-215ENST00000564353 PPP3CBP16298 524 aa12.04□□□□□ -0.48
CLK3-215ENST00000564353 GNB3P16520 340 aa12.04□□□□□ -0.48
CLK3-215ENST00000564353 S100A11P31949 105 aa12.04□□□□□ -0.48
CLK3-215ENST00000564353 AKR1D1P51857 326 aa12.04□□□□□ -0.48
CLK3-215ENST00000564353 MRPS10P82664 201 aaKnown RBP12.04□□□□□ -0.48
CLK3-215ENST00000564353 TEX30Q5JUR7 227 aa12.04□□□□□ -0.48
CLK3-215ENST00000564353 C3orf33Q6P1S2 294 aa12.04□□□□□ -0.48
CLK3-215ENST00000564353 SPICQ8N5J4 248 aa12.04□□□□□ -0.48
CLK3-215ENST00000564353 SLC6A7Q99884 636 aa12.04□□□□□ -0.48
CLK3-215ENST00000564353 PRMT8Q9NR22 394 aaPredicted RBP12.04□□□□□ -0.48
CLK3-215ENST00000564353 PRR13Q9NZ81 148 aa12.04□□□□□ -0.48
CLK3-215ENST00000564353 PTTG3PQ9NZH4 202 aa12.04□□□□□ -0.48
CLK3-215ENST00000564353 EPHA6Q9UF33 1036 aa12.04□□□□□ -0.48
CLK3-215ENST00000564353 PLEKHA6Q9Y2H5 1048 aa12.04□□□□□ -0.48
CLK3-215ENST00000564353 TMEM82A0PJX8 343 aa12.04□□□□□ -0.48
CLK3-215ENST00000564353 MASP2O00187 686 aa12.04□□□□□ -0.48
CLK3-215ENST00000564353 DUX1O43812 170 aa12.04□□□□□ -0.48
CLK3-215ENST00000564353 ZNF432O94892 652 aa12.04□□□□□ -0.48
CLK3-215ENST00000564353 RLN2P04090 185 aa12.04□□□□□ -0.48
CLK3-215ENST00000564353 OR4E1P0C645 316 aa12.04□□□□□ -0.48
CLK3-215ENST00000564353 CPN1P15169 458 aa12.04□□□□□ -0.48
CLK3-215ENST00000564353 NHLRC3Q5JS37 347 aa12.04□□□□□ -0.48
CLK3-215ENST00000564353 BPIFB2Q8N4F0 458 aa12.04□□□□□ -0.48
CLK3-215ENST00000564353 EID2Q8N6I1 236 aa12.04□□□□□ -0.48
CLK3-215ENST00000564353 OR2I1PQ8NGU4 316 aa12.04□□□□□ -0.48
CLK3-215ENST00000564353 OR6N1Q8NGY5 312 aa12.04□□□□□ -0.48
CLK3-215ENST00000564353 NPRL2Q8WTW4 380 aa12.04□□□□□ -0.48
CLK3-215ENST00000564353 ADAT3Q96EY9 351 aaPredicted RBP12.04□□□□□ -0.48
CLK3-215ENST00000564353 SDHAF2Q9NX18 166 aa12.04□□□□□ -0.48
CLK3-215ENST00000564353 HHLA2Q9UM44 414 aa12.04□□□□□ -0.48
CLK3-215ENST00000564353 RPH3AQ9Y2J0 694 aaPredicted RBP12.04□□□□□ -0.48
CLK3-215ENST00000564353 POLR1DQ9Y2S0 133 aa12.04□□□□□ -0.48
CLK3-215ENST00000564353 ZNF175Q9Y473 711 aa12.04□□□□□ -0.48
CLK3-215ENST00000564353 TRBV11-1A0A0K0K1C0 115 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 RAMP1O60894 148 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 ZNF217O75362 1048 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 OR2A4O95047 310 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 LDOC1O95751 146 aaPredicted RBP12.03□□□□□ -0.48
CLK3-215ENST00000564353 CYB5AP00167 134 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 NXPH1P58417 271 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 BTN1A1Q13410 526 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 TAF13Q15543 124 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 C21orf62-AS1Q17RA5 79 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 PRAMEF20Q5VT98 475 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 PNPLA2Q96AD5 504 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 OR2A7Q96R45 310 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 PDCD10Q9BUL8 212 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 MFFQ9GZY8 342 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 SAV1Q9H4B6 383 aaPredicted RBP12.03□□□□□ -0.48
CLK3-215ENST00000564353 G6PC2Q9NQR9 355 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 NOP16Q9Y3C1 178 aaKnown RBP12.03□□□□□ -0.48
CLK3-215ENST00000564353 PHF3Q92576 2039 aaKnown RBP12.03□□□□□ -0.48
CLK3-215ENST00000564353 A0A1W2PP11 408 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 ZNF736B4DX44 427 aaPredicted RBP12.03□□□□□ -0.48
CLK3-215ENST00000564353 G3V3Y1 287 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 EFNA2O43921 213 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 EIF4E2O60573 245 aaKnown RBP12.03□□□□□ -0.48
CLK3-215ENST00000564353 RP2O75695 350 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 MT-ATP6P00846 226 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 ABOP16442 354 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 AVPR2P30518 371 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 PNLIPRP2P54317 469 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 TUSC1Q2TAM9 212 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 CFAP77Q6ZQR2 320 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 KCTD9Q7L273 389 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 NUP54Q7Z3B4 507 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 PLXDC1Q8IUK5 500 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 STPG2Q8N412 459 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 APCDD1LQ8NCL9 501 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 STEAP2Q8NFT2 490 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 OR5D18Q8NGL1 313 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 GPX8Q8TED1 209 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 C11orf40Q8WZ69 217 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 OR6C1Q96RD1 312 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 NICN1Q9BSH3 213 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 VSX1Q9NZR4 365 aaPredicted RBP12.03□□□□□ -0.48
CLK3-215ENST00000564353 EMC3Q9P0I2 261 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 R4GMQ9 66 aa12.03□□□□□ -0.48
CLK3-215ENST00000564353 SNRPGP15A8MWD9 76 aa12.02□□□□□ -0.48
CLK3-215ENST00000564353 FTCDNL1E5RQL4 147 aa12.02□□□□□ -0.48
CLK3-215ENST00000564353 PHYHO14832 338 aa12.02□□□□□ -0.48
CLK3-215ENST00000564353 BET1O15155 118 aa12.02□□□□□ -0.48
CLK3-215ENST00000564353 HLA-AP01891 365 aaKnown RBP12.02□□□□□ -0.48
CLK3-215ENST00000564353 NMBP08949 121 aa12.02□□□□□ -0.48
CLK3-215ENST00000564353 RPL35P42766 123 aaKnown RBP12.02□□□□□ -0.48
CLK3-215ENST00000564353 PRSS12P56730 875 aa12.02□□□□□ -0.48
CLK3-215ENST00000564353 HSF1Q00613 529 aa12.02□□□□□ -0.48
CLK3-215ENST00000564353 LCN10Q6JVE6 187 aa12.02□□□□□ -0.48
CLK3-215ENST00000564353 COX15Q7KZN9 410 aa12.02□□□□□ -0.48
CLK3-215ENST00000564353 OR10G3Q8NGC4 313 aa12.02□□□□□ -0.48
CLK3-215ENST00000564353 OR51E1Q8TCB6 317 aa12.02□□□□□ -0.48
CLK3-215ENST00000564353 ASB17Q8WXJ9 295 aa12.02□□□□□ -0.48
CLK3-215ENST00000564353 ZNF501Q96CX3 271 aaPredicted RBP12.02□□□□□ -0.48
CLK3-215ENST00000564353 CCNL2Q96S94 520 aaPredicted RBP12.02□□□□□ -0.48
CLK3-215ENST00000564353 RAB19A4D1S5 217 aa12.02□□□□□ -0.49
CLK3-215ENST00000564353 ZNF814B7Z6K7 855 aa12.02□□□□□ -0.49
CLK3-215ENST00000564353 IL5P05113 134 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms