RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 ZNF716A6NP11 495 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 PRR32B1ATL7 298 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 CTDSP2O14595 271 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 MRPL33O75394 65 aaKnown RBP7.88□□□□□ -1.15
VPS39-207ENST00000563692 KRT33AO76009 404 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 APOC1P02654 83 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 CELA3AP09093 270 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 OCM2P0CE71 109 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 BMP4P12644 408 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 KLK2P20151 261 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 HSD11B1P28845 292 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 TNFSF8P32971 234 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 SELENOPP49908 381 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 MMP16P51512 607 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 INSL4Q14641 139 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 IDNKQ5T6J7 187 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 RIPPLY2Q5TAB7 128 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 TMEM244Q5VVB8 128 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 OR7E24Q6IFN5 339 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 SPATC1Q76KD6 591 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 LINC00346Q8IVM7 164 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 WDFY1Q8IWB7 410 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 TMEM123Q8N131 208 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 ST7LQ8TDW4 575 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 ITLN2Q8WWU7 325 aaPredicted RBP7.88□□□□□ -1.15
VPS39-207ENST00000563692 TMEM45BQ96B21 275 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 MAP6Q96JE9 813 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 C4orf45Q96LM5 186 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 WDFY2Q96P53 400 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 OR14A2Q96R54 314 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 DCLRE1CQ96SD1 692 aaKnown RBP7.88□□□□□ -1.15
VPS39-207ENST00000563692 AMELYQ99218 206 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 ATF6BQ99941 703 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 WACQ9BTA9 647 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 TCF7L1Q9HCS4 588 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 NOX4Q9NPH5 578 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 GTF2A1LQ9UNN4 478 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 NOSIPQ9Y314 301 aaKnown RBP7.88□□□□□ -1.15
VPS39-207ENST00000563692 LRP12Q9Y561 859 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 KLF2Q9Y5W3 355 aaPredicted RBP7.88□□□□□ -1.15
VPS39-207ENST00000563692 MYO7BQ6PIF6 2116 aa7.88□□□□□ -1.15
VPS39-207ENST00000563692 MPDZO75970 2070 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 IGKV3D-15A0A087WSY6 115 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 TRBV5-5A0A0J9YX44 114 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 A0A1W2PPK0 400 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 FABP12A6NFH5 140 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 ACOD1A6NK06 481 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 NOTOA8MTQ0 251 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 ZNF724A8MTY0 619 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 ZNF878C9JN71 531 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 J3QRK9 145 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 ISG15P05161 165 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 CD2P06729 351 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 TPOP07202 933 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 YES1P07947 543 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 ZNF12P17014 697 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 AGAP20933 346 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 CDAP32320 146 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 RPS11P62280 158 aaKnown RBP eCLIP7.87□□□□□ -1.15
VPS39-207ENST00000563692 GRB2P62993 217 aaKnown RBP7.87□□□□□ -1.15
VPS39-207ENST00000563692 MRPS34P82930 218 aaKnown RBP7.87□□□□□ -1.15
VPS39-207ENST00000563692 STK11Q15831 433 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 ZNF181Q2M3W8 571 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 WDR38Q5JTN6 314 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 RNFT1Q5M7Z0 435 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 FAM27BQ5VT28 67 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 CORO6Q6QEF8 472 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 METAP1DQ6UB28 335 aaPredicted RBP7.87□□□□□ -1.15
VPS39-207ENST00000563692 FOXL2NBQ6ZUU3 175 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 LUZP2Q86TE4 346 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 CCDC190Q86UF4 302 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 CATSPERDQ86XM0 798 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 PRSS35Q8N3Z0 413 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 MFSD4AQ8N468 514 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 PARP16Q8N5Y8 322 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 RNF166Q96A37 237 aaPredicted RBP7.87□□□□□ -1.15
VPS39-207ENST00000563692 ZNF775Q96BV0 537 aaPredicted RBP7.87□□□□□ -1.15
VPS39-207ENST00000563692 DIRAS2Q96HU8 199 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 ZNF845Q96IR2 970 aaPredicted RBP7.87□□□□□ -1.15
VPS39-207ENST00000563692 MRI1Q9BV20 369 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 ZCCHC4Q9H5U6 513 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 MOB1AQ9H8S9 216 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 ZDHHC11Q9H8X9 412 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 ABCB9Q9NP78 766 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 EMC7Q9NPA0 242 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 COQ3Q9NZJ6 369 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 ABRACLQ9P1F3 81 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 COMMD3Q9UBI1 195 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 ASH2LQ9UBL3 628 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 CKLFQ9UBR5 152 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 FOXD3Q9UJU5 478 aaPredicted RBP7.87□□□□□ -1.15
VPS39-207ENST00000563692 GDF2Q9UK05 429 aaPredicted RBP7.87□□□□□ -1.15
VPS39-207ENST00000563692 OR52A1Q9UKL2 312 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 DHDHQ9UQ10 334 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 ZNF835Q9Y2P0 537 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 MEMO1Q9Y316 297 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 UGT2A1Q9Y4X1 527 aa7.87□□□□□ -1.15
VPS39-207ENST00000563692 A0A1B0GTH9 108 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 ISPDA4D126 451 aa7.86□□□□□ -1.15
VPS39-207ENST00000563692 ANKRD61A6NGH8 418 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms