RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 GLYATL3Q5SZD4 288 aa8.23□□□□□ -1.09
VPS39-205ENST00000562258 VASH1Q7L8A9 365 aaPredicted RBP8.23□□□□□ -1.09
VPS39-205ENST00000562258 IQCF2Q8IXL9 164 aa8.23□□□□□ -1.09
VPS39-205ENST00000562258 ZNF679Q8IYX0 411 aa8.23□□□□□ -1.09
VPS39-205ENST00000562258 TMEM185AQ8NFB2 350 aa8.23□□□□□ -1.09
VPS39-205ENST00000562258 CLCC1Q96S66 551 aa8.23□□□□□ -1.09
VPS39-205ENST00000562258 BANF2Q9H503 90 aa8.23□□□□□ -1.09
VPS39-205ENST00000562258 SLC7A10Q9NS82 523 aa8.23□□□□□ -1.09
VPS39-205ENST00000562258 NUP50Q9UKX7 468 aa8.23□□□□□ -1.09
VPS39-205ENST00000562258 A0A1W2PQ09 198 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 C5orf51A6NDU8 294 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 TMEM212A6NML5 194 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 DLGAP1O14490 977 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 UPK3AO75631 287 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 ZNF93P35789 620 aaPredicted RBP8.22□□□□□ -1.09
VPS39-205ENST00000562258 ELFN2Q5R3F8 820 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 C17orf47Q8NEP4 570 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 OR2Z1Q8NG97 314 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 OR51D1Q8NGF3 324 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 RDH5Q92781 318 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 COG8Q96MW5 612 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 SYT3Q9BQG1 590 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 KCNN3Q9UGI6 736 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 ENPP5Q9UJA9 477 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 TRAV6A0A075B6T7 132 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 HS3ST1O14792 307 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 SNRPBP14678 240 aaKnown RBP8.22□□□□□ -1.09
VPS39-205ENST00000562258 IL2RGP31785 369 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 VEGFCP49767 419 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 GABARAPL2P60520 117 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 SLC35D3Q5M8T2 416 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 UGT2A3Q6UWM9 527 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 KCTD9Q7L273 389 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 LSMEM1Q8N8F7 131 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 BMPERQ8N8U9 685 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 CSNK2A3Q8NEV1 391 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 MBOAT4Q96T53 435 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 UBTD1Q9HAC8 227 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 SIAEQ9HAT2 523 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 TRAPPC4Q9Y296 219 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 ZNF354AO60765 605 aaPredicted RBP8.22□□□□□ -1.09
VPS39-205ENST00000562258 GSTT2BP0CG30 244 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 ZNF12P17014 697 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 NFYBP25208 207 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 BDKRB2P30411 391 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 GNRHRP30968 328 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 MAGEB1P43366 347 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 MOGQ16653 247 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 Q499Y3 187 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 OR10K2Q6IF99 312 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 WDR88Q6ZMY6 472 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 ANGPTL5Q86XS5 388 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 SLC30A7Q8NEW0 376 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 DVL3Q92997 716 aaPredicted RBP8.22□□□□□ -1.09
VPS39-205ENST00000562258 TIMP4Q99727 224 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 GPA33Q99795 319 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 FUZQ9BT04 418 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 ZNF696Q9H7X3 374 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 ISG20L2Q9H9L3 353 aaKnown RBP8.22□□□□□ -1.09
VPS39-205ENST00000562258 INPP5EQ9NRR6 644 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 GPR27Q9NS67 375 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 GNG12Q9UBI6 72 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 FBXL3Q9UKT7 428 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 WASF3Q9UPY6 502 aa8.22□□□□□ -1.09
VPS39-205ENST00000562258 GPRIN2O60269 458 aa8.21□□□□□ -1.09
VPS39-205ENST00000562258 SOX18P35713 384 aa8.21□□□□□ -1.09
VPS39-205ENST00000562258 GABRA4P48169 554 aa8.21□□□□□ -1.09
VPS39-205ENST00000562258 SFRP4Q6FHJ7 346 aaPredicted RBP8.21□□□□□ -1.09
VPS39-205ENST00000562258 METAP1DQ6UB28 335 aaPredicted RBP8.21□□□□□ -1.09
VPS39-205ENST00000562258 FAM214BQ7L5A3 538 aa8.21□□□□□ -1.09
VPS39-205ENST00000562258 FBXL14Q8N1E6 418 aa8.21□□□□□ -1.09
VPS39-205ENST00000562258 SCCPDHQ8NBX0 429 aa8.21□□□□□ -1.09
VPS39-205ENST00000562258 OR1F12Q8NHA8 337 aa8.21□□□□□ -1.09
VPS39-205ENST00000562258 NDNFQ8TB73 568 aa8.21□□□□□ -1.09
VPS39-205ENST00000562258 SLC5A7Q9GZV3 580 aa8.21□□□□□ -1.09
VPS39-205ENST00000562258 NELFAQ9H3P2 528 aa8.21□□□□□ -1.09
VPS39-205ENST00000562258 GSKIPQ9P0R6 139 aa8.21□□□□□ -1.09
VPS39-205ENST00000562258 CMAHPQ9Y471 501 aa8.21□□□□□ -1.09
VPS39-205ENST00000562258 PHF3Q92576 2039 aaKnown RBP8.21□□□□□ -1.09
VPS39-205ENST00000562258 POLQO75417 2590 aa8.21□□□□□ -1.09
VPS39-205ENST00000562258 TSC2P49815 1807 aa8.21□□□□□ -1.09
VPS39-205ENST00000562258 LY6G6EA0A0G2JKS1 128 aa8.21□□□□□ -1.09
VPS39-205ENST00000562258 C13orf42A0A1B0GVH6 325 aa8.21□□□□□ -1.09
VPS39-205ENST00000562258 LRRC30A6NM36 301 aa8.21□□□□□ -1.09
VPS39-205ENST00000562258 IMPA2O14732 288 aa8.21□□□□□ -1.09
VPS39-205ENST00000562258 ACTL6BO94805 426 aa8.21□□□□□ -1.09
VPS39-205ENST00000562258 CD3EP07766 207 aa8.21□□□□□ -1.09
VPS39-205ENST00000562258 BLVRBP30043 206 aaPredicted RBP8.21□□□□□ -1.09
VPS39-205ENST00000562258 MZT1Q08AG7 82 aa8.21□□□□□ -1.09
VPS39-205ENST00000562258 FAM27D1Q5T7N8 215 aa8.21□□□□□ -1.09
VPS39-205ENST00000562258 FAHD1Q6P587 224 aa8.21□□□□□ -1.09
VPS39-205ENST00000562258 WDSUB1Q8N9V3 476 aa8.21□□□□□ -1.09
VPS39-205ENST00000562258 STEAP2Q8NFT2 490 aa8.21□□□□□ -1.09
VPS39-205ENST00000562258 FCAMRQ8WWV6 532 aa8.21□□□□□ -1.09
VPS39-205ENST00000562258 PIK3IP1Q96FE7 263 aa8.21□□□□□ -1.09
VPS39-205ENST00000562258 TIMD4Q96H15 378 aa8.21□□□□□ -1.09
VPS39-205ENST00000562258 REEP6Q96HR9 211 aa8.21□□□□□ -1.09
VPS39-205ENST00000562258 METTL8Q9H825 291 aaKnown RBP8.21□□□□□ -1.09
VPS39-205ENST00000562258 DIMT1Q9UNQ2 313 aaKnown RBP8.21□□□□□ -1.09
VPS39-205ENST00000562258 U3KQA8 63 aa8.21□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms