RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 XRCC3O43542 346 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 NDUFA2O43678 99 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 SSNA1O43805 119 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 DOK2O60496 412 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 CDC40O60508 579 aaKnown RBP eCLIP2.19□□□□□ -2.06
SPG11-223ENST00000560858 EIF4E2O60573 245 aaKnown RBP2.19□□□□□ -2.06
SPG11-223ENST00000560858 TSC22D2O75157 780 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 KHDRBS3O75525 346 aaKnown RBP2.19□□□□□ -2.06
SPG11-223ENST00000560858 RP2O75695 350 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 SCO1O75880 301 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 KAT7O95251 611 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 GPR75O95800 540 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 EML2O95834 649 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 WDPCPO95876 746 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 IGKV1D-16P01601 117 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 CD8AP01732 235 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 IGHMP01871 453 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 HRGP04196 525 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 CD74P04233 296 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 HIST1H2ABP04908 130 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 ALDOBP05062 364 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 CD14P08571 375 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 CSF1P09603 554 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 ASAH2BP0C7U1 165 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 UBBP0CG47 229 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 UBCP0CG48 685 aaKnown RBP2.19□□□□□ -2.06
SPG11-223ENST00000560858 SLC35E2P0CK97 266 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 SRMP19623 302 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 MPZP25189 248 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 AK4P27144 223 aaPredicted RBP2.19□□□□□ -2.06
SPG11-223ENST00000560858 TLX1P31314 330 aaPredicted RBP2.19□□□□□ -2.06
SPG11-223ENST00000560858 S100A11P31949 105 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 DCTDP32321 178 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 GALNSP34059 522 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 FAUP35544 74 aaKnown RBP2.19□□□□□ -2.06
SPG11-223ENST00000560858 NUP62P37198 522 aaPredicted RBP2.19□□□□□ -2.06
SPG11-223ENST00000560858 PSMB10P40306 273 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 RAD52P43351 418 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 KIR3DL2P43630 455 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 MAP2K6P52564 334 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 DLX5P56178 289 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 H2BFSP57053 126 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 ACTBP60709 375 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 RAB14P61106 215 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 SEC61A1P61619 476 aaKnown RBP2.19□□□□□ -2.06
SPG11-223ENST00000560858 RPS15P62841 145 aaKnown RBP2.19□□□□□ -2.06
SPG11-223ENST00000560858 RPS27AP62979 156 aaKnown RBP2.19□□□□□ -2.06
SPG11-223ENST00000560858 UBA52P62987 128 aaKnown RBP2.19□□□□□ -2.06
SPG11-223ENST00000560858 ACTG1P63261 375 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 UBE2IP63279 158 aaKnown RBP2.19□□□□□ -2.06
SPG11-223ENST00000560858 STX4Q12846 297 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 SKP2Q13309 424 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 HTR4Q13639 388 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 ALKBH1Q13686 389 aaKnown RBP2.19□□□□□ -2.06
SPG11-223ENST00000560858 RUNX3Q13761 415 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 FAM53BQ14153 422 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 GK2Q14410 553 aaPredicted RBP2.19□□□□□ -2.06
SPG11-223ENST00000560858 ZNF345Q14585 488 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 ZNF273Q14593 569 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 EXOSC7Q15024 291 aaKnown RBP2.19□□□□□ -2.06
SPG11-223ENST00000560858 PON3Q15166 354 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 ZMYND11Q15326 602 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 ZNF74Q16587 644 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 KRTAP24-1Q3LI83 254 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 Q499Y3 187 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 ALG10BQ5I7T1 473 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 FAM78AQ5JUQ0 283 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 LY6G6FQ5SQ64 297 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 TMEM69Q5SWH9 247 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 HES5Q5TA89 166 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 STPG1Q5TH74 334 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 NKAIN2Q5VXU1 208 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 ASPHD2Q6ICH7 369 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 OR5M10Q6IEU7 315 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 OR7E24Q6IFN5 339 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 SLC25A25Q6KCM7 469 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 LPCAT3Q6P1A2 487 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 FAM122CQ6P4D5 195 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 ULK3Q6PHR2 472 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 FIGLAQ6QHK4 219 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 VITQ6UXI7 678 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 APOOLQ6UXV4 268 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 NPSR1Q6W5P4 371 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 LHFPL2Q6ZUX7 228 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 KRTAP5-2Q701N4 177 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 FCRLAQ7L513 359 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 HIST3H2AQ7L7L0 130 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 CHMP1BQ7LBR1 199 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 PRSS45Q7RTY3 260 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 PRSS41Q7RTY9 318 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 DGLUCYQ7Z3D6 616 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 FAM220AQ7Z4H9 259 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 KRT77Q7Z794 578 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 IQCF2Q8IXL9 164 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 ZNF440Q8IYI8 595 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 DND1Q8IYX4 353 aaKnown RBP2.19□□□□□ -2.06
SPG11-223ENST00000560858 ARL14Q8N4G2 192 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 ESX1Q8N693 406 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 CLEC1AQ8NC01 280 aa2.19□□□□□ -2.06
SPG11-223ENST00000560858 LSM14AQ8ND56 463 aaKnown RBP2.19□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms