RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 SNTB1Q13884 538 aaKnown RBP8.02□□□□□ -1.13
LDLR-210ENST00000559340 ZNF544Q6NX49 715 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 TMEM154Q6P9G4 183 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 CORO6Q6QEF8 472 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 SLC22A25Q6T423 547 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 B3GLCTQ6Y288 498 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 STX19Q8N4C7 294 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 ZNF540Q8NDQ6 660 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 BPIFB6Q8NFQ5 453 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 OR5L1Q8NGL2 311 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 RNF133Q8WVZ7 376 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 APH1BQ8WW43 257 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 LGALS12Q96DT0 336 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 PIK3IP1Q96FE7 263 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 TMEM80Q96HE8 168 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 ZNF75AQ96N20 296 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 KCNJ15Q99712 375 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 COPS4Q9BT78 406 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 BCL2L14Q9BZR8 327 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 AMBNQ9NP70 447 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 AASSQ9UDR5 926 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 POU2F3Q9UKI9 436 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 IKZF2Q9UKS7 526 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 EDARQ9UNE0 448 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 EXOSC1Q9Y3B2 195 aaKnown RBP8.02□□□□□ -1.13
LDLR-210ENST00000559340 RNF115Q9Y4L5 304 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 UNC79Q9P2D8 2635 aa8.02□□□□□ -1.13
LDLR-210ENST00000559340 C5orf49A4QMS7 147 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 ZNF503-AS2A6NEH8 195 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 DPRXA6NFQ7 191 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 ACOD1A6NK06 481 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 ABCD4O14678 606 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 SULT1C4O75897 302 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 DCTDP32321 178 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 SELENOVP59797 346 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 ACTA2P62736 377 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 ACTG2P63267 376 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 BSPH1Q075Z2 132 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 MRPL28Q13084 256 aaKnown RBP8.01□□□□□ -1.13
LDLR-210ENST00000559340 ZNF322Q6U7Q0 402 aaPredicted RBP8.01□□□□□ -1.13
LDLR-210ENST00000559340 LYPD4Q6UWN0 246 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 DRAM2Q6UX65 266 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 TMPRSS11AQ6ZMR5 421 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 CFAP77Q6ZQR2 320 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 C22orf34Q6ZV56 151 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 FAM220AQ7Z4H9 259 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 ZNF679Q8IYX0 411 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 PIP4P2Q8N4L2 257 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 ZNF283Q8N7M2 679 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 CPEB3Q8NE35 698 aaKnown RBP8.01□□□□□ -1.13
LDLR-210ENST00000559340 OR52I1Q8NGK6 324 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 ST7LQ8TDW4 575 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 SNX33Q8WV41 574 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 GGHQ92820 318 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 ITFG2Q969R8 447 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 C14orf79Q96F83 325 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 MAP6Q96JE9 813 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 POM121L2Q96KW2 1035 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 C4orf45Q96LM5 186 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 OR8B4Q96RC9 309 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 DDX28Q9NUL7 540 aaKnown RBP8.01□□□□□ -1.13
LDLR-210ENST00000559340 TBCCD1Q9NVR7 557 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 NPAP1Q9NZP6 1156 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 PSORS1C1Q9UIG5 152 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 GRIP1Q9Y3R0 1128 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 ATP23Q9Y6H3 246 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 CREBBPQ92793 2442 aa8.01□□□□□ -1.13
LDLR-210ENST00000559340 TEX15Q9BXT5 2789 aa8□□□□□ -1.13
LDLR-210ENST00000559340 IGHV2OR16-5A0A0B4J2B6 119 aa8□□□□□ -1.13
LDLR-210ENST00000559340 METTL15A6NJ78 407 aa8□□□□□ -1.13
LDLR-210ENST00000559340 DEFB108AA8MXU0 73 aa8□□□□□ -1.13
LDLR-210ENST00000559340 PTGES3LE9PB15 166 aa8□□□□□ -1.13
LDLR-210ENST00000559340 F5H5K5 113 aa8□□□□□ -1.13
LDLR-210ENST00000559340 M0R135 149 aa8□□□□□ -1.13
LDLR-210ENST00000559340 SLC1A7O00341 560 aa8□□□□□ -1.13
LDLR-210ENST00000559340 MRPS14O60783 128 aaKnown RBP8□□□□□ -1.13
LDLR-210ENST00000559340 ABHD16AO95870 558 aa8□□□□□ -1.13
LDLR-210ENST00000559340 CELA3BP08861 270 aa8□□□□□ -1.13
LDLR-210ENST00000559340 RPSAP08865 295 aaKnown RBP8□□□□□ -1.13
LDLR-210ENST00000559340 ZNF35P13682 527 aa8□□□□□ -1.13
LDLR-210ENST00000559340 GLRXP35754 106 aa8□□□□□ -1.13
LDLR-210ENST00000559340 RPS27P42677 84 aaKnown RBP8□□□□□ -1.13
LDLR-210ENST00000559340 SLC6A9P48067 706 aa8□□□□□ -1.13
LDLR-210ENST00000559340 HCCSP53701 268 aa8□□□□□ -1.13
LDLR-210ENST00000559340 UCP2P55851 309 aa8□□□□□ -1.13
LDLR-210ENST00000559340 ROM1Q03395 351 aa8□□□□□ -1.13
LDLR-210ENST00000559340 ST3GAL4Q11206 333 aa8□□□□□ -1.13
LDLR-210ENST00000559340 GALEQ14376 348 aa8□□□□□ -1.13
LDLR-210ENST00000559340 SMN1Q16637 294 aaKnown RBP8□□□□□ -1.13
LDLR-210ENST00000559340 MOGQ16653 247 aa8□□□□□ -1.13
LDLR-210ENST00000559340 ZNF829Q3KNS6 432 aaPredicted RBP8□□□□□ -1.13
LDLR-210ENST00000559340 OTPQ5XKR4 325 aa8□□□□□ -1.13
LDLR-210ENST00000559340 ZNF786Q8N393 782 aa8□□□□□ -1.13
LDLR-210ENST00000559340 YIPF7Q8N8F6 280 aa8□□□□□ -1.13
LDLR-210ENST00000559340 NUP37Q8NFH4 326 aa8□□□□□ -1.13
LDLR-210ENST00000559340 APOBEC3DQ96AK3 386 aaPredicted RBP8□□□□□ -1.13
LDLR-210ENST00000559340 ZNF799Q96GE5 643 aa8□□□□□ -1.13
LDLR-210ENST00000559340 MS4A3Q96HJ5 214 aa8□□□□□ -1.13
LDLR-210ENST00000559340 TBX5Q99593 518 aa8□□□□□ -1.13
LDLR-210ENST00000559340 JAM3Q9BX67 310 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms