RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 ASCL1P50553 236 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 F2RL1P55085 397 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 CLDN6P56747 220 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 ZNF74Q16587 644 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 LYG2Q86SG7 212 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 GPX8Q8TED1 209 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 PHYHIPQ92561 330 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 RRNAD1Q96FB5 475 aaKnown RBP10.2□□□□□ -0.78
LDLR-208ENST00000558518 STACQ99469 402 aa10.2□□□□□ -0.78
LDLR-208ENST00000558518 SLC25A21Q9BQT8 299 aaPredicted RBP10.2□□□□□ -0.78
LDLR-208ENST00000558518 A0A0A6YYH2 397 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 LOC107986453A0A1B0GWG9 222 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 A6NJ64 397 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 ITGB2P05107 769 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 ACAA1P09110 424 aaPredicted RBP10.19□□□□□ -0.78
LDLR-208ENST00000558518 OR3A2P47893 321 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 SGCAQ16586 387 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 EIF2S3LQ2VIR3 472 aaKnown RBP10.19□□□□□ -0.78
LDLR-208ENST00000558518 SLC18B1Q6NT16 456 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 DEFB119Q8N690 84 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 GLYATL2Q8WU03 294 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 ANKRD9Q96BM1 317 aaPredicted RBP10.19□□□□□ -0.78
LDLR-208ENST00000558518 C5orf34Q96MH7 638 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 NICN1Q9BSH3 213 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 LAT2Q9GZY6 243 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 OR10A5Q9H207 317 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 PTGES2Q9H7Z7 377 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 OR5AC2Q9NZP5 309 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 FBXL21Q9UKT6 434 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 REV3LO60673 3130 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 A0A1W2PP11 408 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 CYR61O00622 381 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 NDUFS6O75380 124 aaKnown RBP10.19□□□□□ -0.78
LDLR-208ENST00000558518 WISP1O95388 367 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 TIMP1P01033 207 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 CTLA4P16410 223 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 RORAP35398 523 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 ACKR1Q16570 336 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 SLC35D3Q5M8T2 416 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 FHL5Q5TD97 284 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 RPL7L1Q6DKI1 246 aaKnown RBP10.19□□□□□ -0.78
LDLR-208ENST00000558518 FAM109BQ6ICB4 259 aaPredicted RBP10.19□□□□□ -0.78
LDLR-208ENST00000558518 ZNF524Q96C55 264 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 FAM71F1Q96KD3 344 aaPredicted RBP10.19□□□□□ -0.78
LDLR-208ENST00000558518 JSRP1Q96MG2 331 aaPredicted RBP10.19□□□□□ -0.78
LDLR-208ENST00000558518 WDR77Q9BQA1 342 aaPredicted RBP10.19□□□□□ -0.78
LDLR-208ENST00000558518 MMP25Q9NPA2 562 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 ZNF701Q9NV72 531 aaPredicted RBP10.19□□□□□ -0.78
LDLR-208ENST00000558518 MIOXQ9UGB7 285 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 AMDHD2Q9Y303 409 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 URGCP-MRPS24S4R325 110 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 SSX5O60225 188 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 JMJD7P0C870 316 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 SLC17A1Q14916 467 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 CARD17Q5XLA6 110 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 DCXRQ7Z4W1 244 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 TMEM104Q8NE00 496 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 OR4K15Q8NH41 348 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 ABHD6Q9BV23 337 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 HDAC8Q9BY41 377 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 BARX1Q9HBU1 254 aaPredicted RBP10.19□□□□□ -0.78
LDLR-208ENST00000558518 GHRLQ9UBU3 117 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 PILRAQ9UKJ1 303 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 TMEM14AQ9Y6G1 99 aa10.19□□□□□ -0.78
LDLR-208ENST00000558518 DENND4AQ7Z401 1863 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 IGKV1D-42A0A075B6H8 117 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 A0A1W2PPE3 182 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 EFCAB7A8K855 629 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 H3BML4 177 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 NKX2-2O95096 273 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 AK1P00568 194 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 APODP05090 189 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 RPS4Y1P22090 263 aaKnown RBP10.18□□□□□ -0.78
LDLR-208ENST00000558518 OR1D4P47884 311 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 RNF144BQ7Z419 303 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 ADGRE4PQ86SQ3 457 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 OR52N4Q8NGI2 321 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 OR4A4PQ8NGN8 299 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 SLC22A8Q8TCC7 542 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 NAA11Q9BSU3 229 aaPredicted RBP10.18□□□□□ -0.78
LDLR-208ENST00000558518 SLC19A3Q9BZV2 496 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 LRP12Q9Y561 859 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 HEBP2Q9Y5Z4 205 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 EML5Q05BV3 1969 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 PCNX3Q9H6A9 2034 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 C17orf105B2RV13 164 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 CLDN4O14493 209 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 OR13C7P0DN81 318 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 NME1P15531 152 aaKnown RBP10.18□□□□□ -0.78
LDLR-208ENST00000558518 RAB32Q13637 225 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 RUNX3Q13761 415 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 C16orf47Q6ZP98 133 aaPredicted RBP10.18□□□□□ -0.78
LDLR-208ENST00000558518 PPP1R3BQ86XI6 285 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 CDC20BQ86Y33 519 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 FAM24BQ8N5W8 94 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 ZNF296Q8WUU4 475 aaPredicted RBP10.18□□□□□ -0.78
LDLR-208ENST00000558518 CAPNS2Q96L46 248 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 PRRT1Q99946 306 aa10.18□□□□□ -0.78
LDLR-208ENST00000558518 RPP25Q9BUL9 199 aaKnown RBP10.18□□□□□ -0.78
LDLR-208ENST00000558518 G6PC3Q9BUM1 346 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms