RNA–Protein interactions for RNA: ENST00000554873.5

SYNE3-203, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 5 BASIC

Gene SYNE3, Length 2,826 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-203ENST00000554873 HNF4GQ14541 408 aa14.1□□□□□ -0.15
SYNE3-203ENST00000554873 TRMT12Q53H54 448 aaKnown RBP14.1□□□□□ -0.15
SYNE3-203ENST00000554873 EIPR1Q53HC9 387 aa14.1□□□□□ -0.15
SYNE3-203ENST00000554873 MRPL2Q5T653 305 aaKnown RBP14.1□□□□□ -0.15
SYNE3-203ENST00000554873 Q6ZRG5 221 aa14.1□□□□□ -0.15
SYNE3-203ENST00000554873 KCTD9Q7L273 389 aa14.1□□□□□ -0.15
SYNE3-203ENST00000554873 VN1R4Q7Z5H5 301 aa14.1□□□□□ -0.15
SYNE3-203ENST00000554873 LYPD6BQ8NI32 183 aa14.1□□□□□ -0.15
SYNE3-203ENST00000554873 MRPS33Q9Y291 106 aaKnown RBP14.1□□□□□ -0.15
SYNE3-203ENST00000554873 C13orf42A0A1B0GVH6 325 aa14.09□□□□□ -0.15
SYNE3-203ENST00000554873 MSGN1A6NI15 193 aa14.09□□□□□ -0.15
SYNE3-203ENST00000554873 UMAD1C9J7I0 102 aa14.09□□□□□ -0.15
SYNE3-203ENST00000554873 PEX12O00623 359 aa14.09□□□□□ -0.15
SYNE3-203ENST00000554873 EREGO14944 169 aa14.09□□□□□ -0.15
SYNE3-203ENST00000554873 ALOX12BO75342 701 aa14.09□□□□□ -0.15
SYNE3-203ENST00000554873 PTBP3O95758 552 aaKnown RBP14.09□□□□□ -0.15
SYNE3-203ENST00000554873 THBS1P07996 1170 aa14.09□□□□□ -0.15
SYNE3-203ENST00000554873 NANOS3P60323 173 aaKnown RBP14.09□□□□□ -0.15
SYNE3-203ENST00000554873 LRFN5Q96NI6 719 aa14.09□□□□□ -0.15
SYNE3-203ENST00000554873 CST11Q9H112 138 aa14.09□□□□□ -0.15
SYNE3-203ENST00000554873 OPN3Q9H1Y3 402 aaPredicted RBP14.09□□□□□ -0.15
SYNE3-203ENST00000554873 TAF9BQ9HBM6 251 aa14.09□□□□□ -0.15
SYNE3-203ENST00000554873 CHD7Q9P2D1 2997 aa14.09□□□□□ -0.15
SYNE3-203ENST00000554873 MUC22E2RYF6 1773 aaPredicted RBP14.09□□□□□ -0.15
SYNE3-203ENST00000554873 HTR2CP28335 458 aa14.09□□□□□ -0.15
SYNE3-203ENST00000554873 CMPK1P30085 196 aa14.09□□□□□ -0.15
SYNE3-203ENST00000554873 ID4P47928 161 aa14.09□□□□□ -0.15
SYNE3-203ENST00000554873 C14orf28Q4W4Y0 310 aa14.09□□□□□ -0.15
SYNE3-203ENST00000554873 PDZD11Q5EBL8 140 aa14.09□□□□□ -0.15
SYNE3-203ENST00000554873 GFI1BQ5VTD9 330 aa14.09□□□□□ -0.15
SYNE3-203ENST00000554873 TTLL10Q6ZVT0 673 aa14.09□□□□□ -0.15
SYNE3-203ENST00000554873 GKN2Q86XP6 184 aa14.09□□□□□ -0.15
SYNE3-203ENST00000554873 OR51D1Q8NGF3 324 aa14.09□□□□□ -0.15
SYNE3-203ENST00000554873 ZNF296Q8WUU4 475 aaPredicted RBP14.09□□□□□ -0.15
SYNE3-203ENST00000554873 SEH1LQ96EE3 360 aa14.09□□□□□ -0.15
SYNE3-203ENST00000554873 MVB12AQ96EY5 273 aa14.09□□□□□ -0.15
SYNE3-203ENST00000554873 AQP10Q96PS8 301 aa14.09□□□□□ -0.15
SYNE3-203ENST00000554873 A0A087WUJ7 227 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 GPR89AB7ZAQ6 455 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 H0YIZ8 118 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 PSMD9O00233 223 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 HIST1H2BKO60814 126 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 HIST1H2BJP06899 126 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 GPR89BP0CG08 455 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 FABP4P15090 132 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 FGF7P21781 194 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 HIST1H2BOP23527 126 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 HIST1H2BBP33778 126 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 SERPINF1P36955 418 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 CX3CR1P49238 355 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 HIST1H2BDP58876 126 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 HIST1H2BCP62807 126 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 NKX6-1P78426 367 aaPredicted RBP14.08□□□□□ -0.16
SYNE3-203ENST00000554873 COTL1Q14019 142 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 GGTLC2Q14390 218 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 ELOCQ15369 112 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 HIST2H2BEQ16778 126 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 ZNF674Q2M3X9 581 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 HIST2H2BFQ5QNW6 126 aaPredicted RBP14.08□□□□□ -0.16
SYNE3-203ENST00000554873 AGBL4Q5VU57 503 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 ZNF529Q6P280 563 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 CDK20Q8IZL9 346 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 COMMD1Q8N668 190 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 RSC1A1Q92681 617 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 FGF13Q92913 245 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 HIST1H2BHQ93079 126 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 HIST1H2BNQ99877 126 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 HIST1H2BMQ99879 126 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 SERGEFQ9UGK8 458 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 ZNF736B4DX44 427 aaPredicted RBP14.08□□□□□ -0.16
SYNE3-203ENST00000554873 TOX3O15405 576 aaPredicted RBP14.08□□□□□ -0.16
SYNE3-203ENST00000554873 CDC40O60508 579 aaKnown RBP eCLIP14.08□□□□□ -0.16
SYNE3-203ENST00000554873 CYTIPO60759 359 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 MAS1P04201 325 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 CEACAM5P06731 702 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 LAMP2P13473 410 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 ZNF25P17030 456 aaPredicted RBP14.08□□□□□ -0.16
SYNE3-203ENST00000554873 IL2RGP31785 369 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 SOX2P48431 317 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 BPIFB3P59826 476 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 ZNF619Q8N2I2 560 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 M1APQ8TC57 530 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 CASTOR1Q8WTX7 329 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 NTNG2Q96CW9 530 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 TIMM29Q9BSF4 260 aa14.08□□□□□ -0.16
SYNE3-203ENST00000554873 USP36Q9P275 1121 aaKnown RBP14.08□□□□□ -0.16
SYNE3-203ENST00000554873 PHOX2AO14813 284 aa14.07□□□□□ -0.16
SYNE3-203ENST00000554873 CYB5AP00167 134 aa14.07□□□□□ -0.16
SYNE3-203ENST00000554873 NID1P14543 1247 aa14.07□□□□□ -0.16
SYNE3-203ENST00000554873 RPS4Y1P22090 263 aaKnown RBP14.07□□□□□ -0.16
SYNE3-203ENST00000554873 ID2Q02363 134 aa14.07□□□□□ -0.16
SYNE3-203ENST00000554873 FAHD2BQ6P2I3 314 aaPredicted RBP14.07□□□□□ -0.16
SYNE3-203ENST00000554873 DTD1Q8TEA8 209 aa14.07□□□□□ -0.16
SYNE3-203ENST00000554873 FAHD2AQ96GK7 314 aa14.07□□□□□ -0.16
SYNE3-203ENST00000554873 SLC6A7Q99884 636 aa14.07□□□□□ -0.16
SYNE3-203ENST00000554873 DDA1Q9BW61 102 aa14.07□□□□□ -0.16
SYNE3-203ENST00000554873 SLC5A7Q9GZV3 580 aa14.07□□□□□ -0.16
SYNE3-203ENST00000554873 ADAP2Q9NPF8 381 aa14.07□□□□□ -0.16
SYNE3-203ENST00000554873 PHPT1Q9NRX4 125 aaPredicted RBP14.07□□□□□ -0.16
SYNE3-203ENST00000554873 TMEM74BQ9NUR3 256 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms