RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 SQSTM1Q13501 440 aa15.72■□□□□ 0.11
SYNE3-202ENST00000553340 ZNF704Q6ZNC4 412 aaPredicted RBP15.72■□□□□ 0.11
SYNE3-202ENST00000553340 RAB11FIP2Q7L804 512 aa15.72■□□□□ 0.11
SYNE3-202ENST00000553340 SPAG16Q8N0X2 631 aa15.72■□□□□ 0.11
SYNE3-202ENST00000553340 GVQW1Q8N7I0 195 aa15.72■□□□□ 0.11
SYNE3-202ENST00000553340 PTPMT1Q8WUK0 201 aaPredicted RBP15.72■□□□□ 0.11
SYNE3-202ENST00000553340 FAM46BQ96A09 425 aa15.72■□□□□ 0.11
SYNE3-202ENST00000553340 CHMP1AQ9HD42 196 aaPredicted RBP15.72■□□□□ 0.11
SYNE3-202ENST00000553340 OR52A1Q9UKL2 312 aa15.72■□□□□ 0.11
SYNE3-202ENST00000553340 F5P12259 2224 aa15.72■□□□□ 0.11
SYNE3-202ENST00000553340 FRG2CA6NGY1 282 aa15.71■□□□□ 0.11
SYNE3-202ENST00000553340 ZNF98A6NK75 572 aa15.71■□□□□ 0.11
SYNE3-202ENST00000553340 DUS4LO95620 317 aaKnown RBP15.71■□□□□ 0.11
SYNE3-202ENST00000553340 PGAM2P15259 253 aa15.71■□□□□ 0.11
SYNE3-202ENST00000553340 AKR1C4P17516 323 aa15.71■□□□□ 0.11
SYNE3-202ENST00000553340 ADCYAP1P18509 176 aa15.71■□□□□ 0.11
SYNE3-202ENST00000553340 PVALBP20472 110 aaPredicted RBP15.71■□□□□ 0.11
SYNE3-202ENST00000553340 AKR1D1P51857 326 aa15.71■□□□□ 0.11
SYNE3-202ENST00000553340 COL13A1Q5TAT6 717 aaPredicted RBP15.71■□□□□ 0.11
SYNE3-202ENST00000553340 OR52W1Q6IF63 320 aa15.71■□□□□ 0.11
SYNE3-202ENST00000553340 MARCH3Q86UD3 253 aa15.71■□□□□ 0.11
SYNE3-202ENST00000553340 SLC22A18ASQ8N1D0 253 aa15.71■□□□□ 0.11
SYNE3-202ENST00000553340 PAQR8Q8TEZ7 354 aa15.71■□□□□ 0.11
SYNE3-202ENST00000553340 ARL11Q969Q4 196 aa15.71■□□□□ 0.11
SYNE3-202ENST00000553340 OR8D2Q9GZM6 311 aa15.71■□□□□ 0.11
SYNE3-202ENST00000553340 COA3Q9Y2R0 106 aaPredicted RBP15.71■□□□□ 0.11
SYNE3-202ENST00000553340 CACNA1IQ9P0X4 2223 aa15.71■□□□□ 0.11
SYNE3-202ENST00000553340 F8VVB4 439 aa15.71■□□□□ 0.11
SYNE3-202ENST00000553340 F8VWA3 439 aa15.71■□□□□ 0.11
SYNE3-202ENST00000553340 F8W036 122 aa15.71■□□□□ 0.11
SYNE3-202ENST00000553340 CRHP06850 196 aa15.71■□□□□ 0.11
SYNE3-202ENST00000553340 GP1BBP13224 206 aa15.71■□□□□ 0.11
SYNE3-202ENST00000553340 CRABP1P29762 137 aa15.71■□□□□ 0.11
SYNE3-202ENST00000553340 BLOC1S1P78537 153 aa15.71■□□□□ 0.11
SYNE3-202ENST00000553340 LYPD6Q86Y78 171 aa15.71■□□□□ 0.11
SYNE3-202ENST00000553340 RNF141Q8WVD5 230 aa15.71■□□□□ 0.11
SYNE3-202ENST00000553340 G6PC2Q9NQR9 355 aa15.71■□□□□ 0.11
SYNE3-202ENST00000553340 WBP1LQ9NX94 342 aa15.71■□□□□ 0.11
SYNE3-202ENST00000553340 TMEM184BQ9Y519 407 aaPredicted RBP15.71■□□□□ 0.11
SYNE3-202ENST00000553340 HS3ST3A1Q9Y663 406 aa15.71■□□□□ 0.11
SYNE3-202ENST00000553340 CDH23Q9H251 3354 aa15.71■□□□□ 0.1
SYNE3-202ENST00000553340 WIPF3A6NGB9 483 aa15.7■□□□□ 0.1
SYNE3-202ENST00000553340 EFSO43281 561 aa15.7■□□□□ 0.1
SYNE3-202ENST00000553340 DXOO77932 396 aaKnown RBP15.7■□□□□ 0.1
SYNE3-202ENST00000553340 MPZL1O95297 269 aa15.7■□□□□ 0.1
SYNE3-202ENST00000553340 IFNA6P05013 189 aa15.7■□□□□ 0.1
SYNE3-202ENST00000553340 PGCP20142 388 aa15.7■□□□□ 0.1
SYNE3-202ENST00000553340 HRH1P35367 487 aa15.7■□□□□ 0.1
SYNE3-202ENST00000553340 RABIFP47224 123 aa15.7■□□□□ 0.1
SYNE3-202ENST00000553340 TMEM244Q5VVB8 128 aa15.7■□□□□ 0.1
SYNE3-202ENST00000553340 TMEM71Q6P5X7 295 aa15.7■□□□□ 0.1
SYNE3-202ENST00000553340 ADAD2Q8NCV1 583 aaKnown RBP15.7■□□□□ 0.1
SYNE3-202ENST00000553340 DCUN1D4Q92564 292 aa15.7■□□□□ 0.1
SYNE3-202ENST00000553340 CMBLQ96DG6 245 aa15.7■□□□□ 0.1
SYNE3-202ENST00000553340 TCTN2Q96GX1 697 aa15.7■□□□□ 0.1
SYNE3-202ENST00000553340 GAL3ST4Q96RP7 486 aa15.7■□□□□ 0.1
SYNE3-202ENST00000553340 CSAG2Q9Y5P2 127 aa15.7■□□□□ 0.1
SYNE3-202ENST00000553340 TEX13DA0A0J9YY54 714 aaPredicted RBP15.7■□□□□ 0.1
SYNE3-202ENST00000553340 C13orf42A0A1B0GVH6 325 aa15.7■□□□□ 0.1
SYNE3-202ENST00000553340 NUDT19A8MXV4 375 aa15.7■□□□□ 0.1
SYNE3-202ENST00000553340 KCNAB3O43448 404 aa15.7■□□□□ 0.1
SYNE3-202ENST00000553340 ACTL6AO96019 429 aa15.7■□□□□ 0.1
SYNE3-202ENST00000553340 ZNF823P16415 610 aa15.7■□□□□ 0.1
SYNE3-202ENST00000553340 IL12BP29460 328 aa15.7■□□□□ 0.1
SYNE3-202ENST00000553340 RPL35P42766 123 aaKnown RBP15.7■□□□□ 0.1
SYNE3-202ENST00000553340 SLC22A6Q4U2R8 563 aa15.7■□□□□ 0.1
SYNE3-202ENST00000553340 BAP18Q8IXM2 172 aa15.7■□□□□ 0.1
SYNE3-202ENST00000553340 SLC30A7Q8NEW0 376 aa15.7■□□□□ 0.1
SYNE3-202ENST00000553340 NUDCD2Q8WVJ2 157 aa15.7■□□□□ 0.1
SYNE3-202ENST00000553340 MAP3K3Q99759 626 aa15.7■□□□□ 0.1
SYNE3-202ENST00000553340 IGFLR1Q9H665 355 aa15.7■□□□□ 0.1
SYNE3-202ENST00000553340 CNTD2Q9H8S5 307 aa15.7■□□□□ 0.1
SYNE3-202ENST00000553340 TMEM100Q9NV29 134 aa15.7■□□□□ 0.1
SYNE3-202ENST00000553340 TMEM269A0A1B0GVZ9 245 aa15.69■□□□□ 0.1
SYNE3-202ENST00000553340 LMX1BO60663 402 aa15.69■□□□□ 0.1
SYNE3-202ENST00000553340 CD79AP11912 226 aa15.69■□□□□ 0.1
SYNE3-202ENST00000553340 CTSEP14091 401 aa15.69■□□□□ 0.1
SYNE3-202ENST00000553340 NAAAQ02083 359 aa15.69■□□□□ 0.1
SYNE3-202ENST00000553340 AIMP2Q13155 320 aaKnown RBP15.69■□□□□ 0.1
SYNE3-202ENST00000553340 C1orf61Q13536 156 aa15.69■□□□□ 0.1
SYNE3-202ENST00000553340 OR7A5Q15622 319 aa15.69■□□□□ 0.1
SYNE3-202ENST00000553340 STK11Q15831 433 aa15.69■□□□□ 0.1
SYNE3-202ENST00000553340 GAS2L1Q99501 681 aaPredicted RBP15.69■□□□□ 0.1
SYNE3-202ENST00000553340 DZANK1Q9NVP4 752 aa15.69■□□□□ 0.1
SYNE3-202ENST00000553340 CARHSP1Q9Y2V2 147 aaKnown RBP15.69■□□□□ 0.1
SYNE3-202ENST00000553340 RHBDD3Q9Y3P4 386 aa15.69■□□□□ 0.1
SYNE3-202ENST00000553340 C17orf51A8MQB3 221 aa15.69■□□□□ 0.1
SYNE3-202ENST00000553340 CA3P07451 260 aa15.69■□□□□ 0.1
SYNE3-202ENST00000553340 CYCSP99999 105 aaKnown RBP15.69■□□□□ 0.1
SYNE3-202ENST00000553340 C10orf91Q5T1B1 145 aa15.69■□□□□ 0.1
SYNE3-202ENST00000553340 DHRS7BQ6IAN0 325 aaPredicted RBP15.69■□□□□ 0.1
SYNE3-202ENST00000553340 CBLN2Q8IUK8 224 aa15.69■□□□□ 0.1
SYNE3-202ENST00000553340 TMEM151BQ8IW70 566 aa15.69■□□□□ 0.1
SYNE3-202ENST00000553340 CNTNAP3BQ96NU0 1288 aa15.69■□□□□ 0.1
SYNE3-202ENST00000553340 ADAT1Q9BUB4 502 aaKnown RBP15.69■□□□□ 0.1
SYNE3-202ENST00000553340 FREM3P0C091 2139 aa15.69■□□□□ 0.1
SYNE3-202ENST00000553340 TMED7-TICAM2A0A0A6YYA0 188 aa15.68■□□□□ 0.1
SYNE3-202ENST00000553340 IGHMP01871 453 aa15.68■□□□□ 0.1
SYNE3-202ENST00000553340 TBPP20226 339 aa15.68■□□□□ 0.1
SYNE3-202ENST00000553340 CD1CP29017 333 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms