RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 AKR1C4P17516 323 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 CFL1P23528 166 aaKnown RBP4.98□□□□□ -1.61
LIMA1-215ENST00000552823 SLC25A1P53007 311 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 TGIF1Q15583 401 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 C2orf68Q2NKX9 166 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 CDCP2Q5VXM1 449 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 SLC22A10Q63ZE4 541 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 GLT8D1Q68CQ7 371 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 TMEM81Q6P7N7 255 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 ANGPTL5Q86XS5 388 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 WDSUB1Q8N9V3 476 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 FAM181AQ8N9Y4 354 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 SMIM4Q8WVI0 70 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 MSANTD3Q96H12 275 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 NICN1Q9BSH3 213 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 MOV10Q9HCE1 1003 aaKnown RBP4.98□□□□□ -1.61
LIMA1-215ENST00000552823 PLEK2Q9NYT0 353 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 STEAP1Q9UHE8 339 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 GDF2Q9UK05 429 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-215ENST00000552823 A0A096LPE4 126 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 A0A1W2PPZ6 126 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 CIB4A0PJX0 185 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 OR2M5A3KFT3 312 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 BLACEA4D250 179 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 ANKUB1A6NFN9 424 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 LIPT2A6NK58 231 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 SDCBPO00560 298 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-215ENST00000552823 GPR171O14626 319 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 TP53I11O14683 189 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 ANGPTL7O43827 346 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 DXOO77932 396 aaKnown RBP4.98□□□□□ -1.61
LIMA1-215ENST00000552823 RAB3DO95716 219 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 LDOC1O95751 146 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-215ENST00000552823 ACSM4P0C7M7 580 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 RFPL3SP0C7P2 107 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 ANXA3P12429 323 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 ITGA3P26006 1051 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 MAPK3P27361 379 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-215ENST00000552823 GALNSP34059 522 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 FOLR3P41439 243 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 ZNF121P58317 390 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-215ENST00000552823 BAMBIQ13145 260 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 ARFRP1Q13795 201 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 IGFBP7Q16270 282 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 LRRTM1Q86UE6 522 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 C1orf210Q8IVY1 113 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 DUSP18Q8NEJ0 188 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 AKR7LQ8NHP1 331 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 ASB10Q8WXI3 467 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 KIAA1143Q96AT1 154 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-215ENST00000552823 ELMOD3Q96FG2 381 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 SFXN2Q96NB2 322 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 KCNJ15Q99712 375 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 PDCD10Q9BUL8 212 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 ST6GALNAC5Q9BVH7 336 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 UCK1Q9HA47 277 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 ZNF319Q9P2F9 582 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 ZNF230Q9UIE0 474 aaPredicted RBP4.98□□□□□ -1.61
LIMA1-215ENST00000552823 HS3ST3B1Q9Y662 390 aa4.98□□□□□ -1.61
LIMA1-215ENST00000552823 IGF2RP11717 2491 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 FAM230AA0A1W2PPH8 454 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 EEF1E1-BLOC1S5C9J1V9 151 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 D6RAR5 112 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 SLC33A1O00400 549 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-215ENST00000552823 CTAG2O75638 210 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 CRTAPO75718 401 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-215ENST00000552823 STK17BO94768 372 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 MT-ATP6P00846 226 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 PMP2P02689 132 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 SERPINA2P20848 420 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 MMP15P51511 669 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 CXADRP78310 365 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 RASGEF1BQ0VAM2 473 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 PMPCAQ10713 525 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 KLF9Q13886 244 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-215ENST00000552823 GSG1Q2KHT4 349 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 CCDC58Q4VC31 144 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 SFRP5Q5T4F7 317 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 ASPHD2Q6ICH7 369 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 PRSS42Q7Z5A4 293 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 GALNT16Q8N428 558 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 OR11G2Q8NGC1 345 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 RNF128Q8TEB7 428 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 NAT6Q93015 286 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 MCHR2Q969V1 340 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 HAVCR1Q96D42 359 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 ZNF845Q96IR2 970 aaPredicted RBP4.97□□□□□ -1.61
LIMA1-215ENST00000552823 ZNF416Q9BWM5 594 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 PBOV1Q9GZY1 135 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP4.97□□□□□ -1.61
LIMA1-215ENST00000552823 C1orf198Q9H425 327 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 CNTD2Q9H8S5 307 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 EXOSC3Q9NQT5 275 aaKnown RBP4.97□□□□□ -1.61
LIMA1-215ENST00000552823 NUBP2Q9Y5Y2 271 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 MEX3AA1L020 520 aaKnown RBP4.97□□□□□ -1.61
LIMA1-215ENST00000552823 ANKRD34BA5PLL1 514 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 GGT3PA6NGU5 568 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 FTCDNL1E5RQL4 147 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 ACOT7O00154 380 aa4.97□□□□□ -1.61
LIMA1-215ENST00000552823 SIGLEC5O15389 551 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms