RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 VSIG4Q9Y279 399 aa13.18□□□□□ -0.3
HOXC11-202ENST00000546378 URGCP-MRPS24S4R325 110 aa13.18□□□□□ -0.3
HOXC11-202ENST00000546378 OR4C45A6NMZ5 311 aa13.18□□□□□ -0.3
HOXC11-202ENST00000546378 TTLL8A6PVC2 850 aa13.18□□□□□ -0.3
HOXC11-202ENST00000546378 ACTL6AO96019 429 aa13.18□□□□□ -0.3
HOXC11-202ENST00000546378 RAB3AP20336 220 aa13.18□□□□□ -0.3
HOXC11-202ENST00000546378 CD96P40200 585 aa13.18□□□□□ -0.3
HOXC11-202ENST00000546378 SLC6A9P48067 706 aa13.18□□□□□ -0.3
HOXC11-202ENST00000546378 GFERP55789 205 aa13.18□□□□□ -0.3
HOXC11-202ENST00000546378 MRPS21P82921 87 aaKnown RBP13.18□□□□□ -0.3
HOXC11-202ENST00000546378 SMAD4Q13485 552 aaKnown RBP13.18□□□□□ -0.3
HOXC11-202ENST00000546378 PAN3Q58A45 887 aaKnown RBP13.18□□□□□ -0.3
HOXC11-202ENST00000546378 ADAM5Q6NVV9 412 aa13.18□□□□□ -0.3
HOXC11-202ENST00000546378 FAM71CQ8NEG0 241 aa13.18□□□□□ -0.3
HOXC11-202ENST00000546378 ZNF417Q8TAU3 575 aa13.18□□□□□ -0.3
HOXC11-202ENST00000546378 WDR92Q96MX6 357 aa13.18□□□□□ -0.3
HOXC11-202ENST00000546378 SEMA6CQ9H3T2 930 aa13.18□□□□□ -0.3
HOXC11-202ENST00000546378 PTTG3PQ9NZH4 202 aa13.18□□□□□ -0.3
HOXC11-202ENST00000546378 GPRIN2O60269 458 aa13.17□□□□□ -0.3
HOXC11-202ENST00000546378 MED6O75586 246 aa13.17□□□□□ -0.3
HOXC11-202ENST00000546378 EIF3GO75821 320 aaKnown RBP eCLIP13.17□□□□□ -0.3
HOXC11-202ENST00000546378 PRH1P02810 166 aa13.17□□□□□ -0.3
HOXC11-202ENST00000546378 ABOP16442 354 aa13.17□□□□□ -0.3
HOXC11-202ENST00000546378 CDAP32320 146 aa13.17□□□□□ -0.3
HOXC11-202ENST00000546378 LINC01590Q5TEZ4 76 aa13.17□□□□□ -0.3
HOXC11-202ENST00000546378 SYS1Q8N2H4 156 aa13.17□□□□□ -0.3
HOXC11-202ENST00000546378 TMEM104Q8NE00 496 aa13.17□□□□□ -0.3
HOXC11-202ENST00000546378 SLC22A18Q96BI1 424 aa13.17□□□□□ -0.3
HOXC11-202ENST00000546378 MRPS33Q9Y291 106 aaKnown RBP13.17□□□□□ -0.3
HOXC11-202ENST00000546378 ZNF878C9JN71 531 aa13.17□□□□□ -0.3
HOXC11-202ENST00000546378 CYR61O00622 381 aa13.17□□□□□ -0.3
HOXC11-202ENST00000546378 SSX5O60225 188 aa13.17□□□□□ -0.3
HOXC11-202ENST00000546378 POU3F1Q03052 451 aaPredicted RBP13.17□□□□□ -0.3
HOXC11-202ENST00000546378 SMCO1Q147U7 214 aa13.17□□□□□ -0.3
HOXC11-202ENST00000546378 MISPQ8IVT2 679 aa13.17□□□□□ -0.3
HOXC11-202ENST00000546378 SAMD14Q8IZD0 417 aaPredicted RBP13.17□□□□□ -0.3
HOXC11-202ENST00000546378 NR4A3Q92570 626 aa13.17□□□□□ -0.3
HOXC11-202ENST00000546378 FOXRED1Q96CU9 486 aaPredicted RBP13.17□□□□□ -0.3
HOXC11-202ENST00000546378 SEH1LQ96EE3 360 aa13.17□□□□□ -0.3
HOXC11-202ENST00000546378 DNTTIP1Q9H147 329 aa13.17□□□□□ -0.3
HOXC11-202ENST00000546378 KLK13Q9UKR3 277 aa13.17□□□□□ -0.3
HOXC11-202ENST00000546378 RHBDD3Q9Y3P4 386 aa13.17□□□□□ -0.3
HOXC11-202ENST00000546378 LOC400499M0QZD8 3231 aa13.17□□□□□ -0.3
HOXC11-202ENST00000546378 LOC107986453A0A1B0GWG9 222 aa13.17□□□□□ -0.3
HOXC11-202ENST00000546378 FAM221BA6H8Z2 402 aa13.17□□□□□ -0.3
HOXC11-202ENST00000546378 MSGN1A6NI15 193 aa13.17□□□□□ -0.3
HOXC11-202ENST00000546378 ZNF254O75437 659 aa13.17□□□□□ -0.3
HOXC11-202ENST00000546378 CRYBA1P05813 215 aa13.17□□□□□ -0.3
HOXC11-202ENST00000546378 FGF2P09038 288 aa13.17□□□□□ -0.3
HOXC11-202ENST00000546378 UBBP0CG47 229 aa13.17□□□□□ -0.3
HOXC11-202ENST00000546378 UBCP0CG48 685 aaKnown RBP13.17□□□□□ -0.3
HOXC11-202ENST00000546378 RPS4XP62701 263 aaKnown RBP13.17□□□□□ -0.3
HOXC11-202ENST00000546378 SLC16A9Q7RTY1 509 aa13.17□□□□□ -0.3
HOXC11-202ENST00000546378 MCATQ8IVS2 390 aaKnown RBP13.17□□□□□ -0.3
HOXC11-202ENST00000546378 DEFB123Q8N688 67 aa13.17□□□□□ -0.3
HOXC11-202ENST00000546378 OR52N4Q8NGI2 321 aa13.17□□□□□ -0.3
HOXC11-202ENST00000546378 OR10Z1Q8NGY1 313 aa13.17□□□□□ -0.3
HOXC11-202ENST00000546378 ZNF578Q96N58 590 aaPredicted RBP13.17□□□□□ -0.3
HOXC11-202ENST00000546378 ATPIF1Q9UII2 106 aa13.17□□□□□ -0.3
HOXC11-202ENST00000546378 MMP17Q9ULZ9 603 aa13.17□□□□□ -0.3
HOXC11-202ENST00000546378 A0A087WUJ7 227 aa13.16□□□□□ -0.3
HOXC11-202ENST00000546378 NME2P1O60361 137 aa13.16□□□□□ -0.3
HOXC11-202ENST00000546378 SRPX2O60687 465 aaPredicted RBP13.16□□□□□ -0.3
HOXC11-202ENST00000546378 HPP00738 406 aa13.16□□□□□ -0.3
HOXC11-202ENST00000546378 ARG1P05089 322 aa13.16□□□□□ -0.3
HOXC11-202ENST00000546378 RBM34P42696 430 aaKnown RBP13.16□□□□□ -0.3
HOXC11-202ENST00000546378 RIDAP52758 137 aaKnown RBP13.16□□□□□ -0.3
HOXC11-202ENST00000546378 FXYD4P59646 89 aa13.16□□□□□ -0.3
HOXC11-202ENST00000546378 SP6Q3SY56 376 aa13.16□□□□□ -0.3
HOXC11-202ENST00000546378 STOML3Q8TAV4 291 aa13.16□□□□□ -0.3
HOXC11-202ENST00000546378 AKR1E2Q96JD6 320 aa13.16□□□□□ -0.3
HOXC11-202ENST00000546378 PELOQ9BRX2 385 aaKnown RBP13.16□□□□□ -0.3
HOXC11-202ENST00000546378 MUC3AQ02505 3323 aa13.16□□□□□ -0.3
HOXC11-202ENST00000546378 LOC100289279A0A1B0GTE1 492 aa13.16□□□□□ -0.3
HOXC11-202ENST00000546378 A0A1W2PPC1 479 aa13.16□□□□□ -0.3
HOXC11-202ENST00000546378 A8MXK9 166 aa13.16□□□□□ -0.3
HOXC11-202ENST00000546378 C2orf74A8MZ97 194 aa13.16□□□□□ -0.3
HOXC11-202ENST00000546378 C1QL1O75973 258 aa13.16□□□□□ -0.3
HOXC11-202ENST00000546378 SFTPDP35247 375 aa13.16□□□□□ -0.3
HOXC11-202ENST00000546378 OR3A2P47893 321 aa13.16□□□□□ -0.3
HOXC11-202ENST00000546378 TAS2R19P59542 299 aa13.16□□□□□ -0.3
HOXC11-202ENST00000546378 FHL1Q13642 323 aa13.16□□□□□ -0.3
HOXC11-202ENST00000546378 ALG11Q2TAA5 492 aa13.16□□□□□ -0.3
HOXC11-202ENST00000546378 HFEQ30201 348 aa13.16□□□□□ -0.3
HOXC11-202ENST00000546378 LY6G6FQ5SQ64 297 aa13.16□□□□□ -0.3
HOXC11-202ENST00000546378 TMEM225Q6GV28 225 aa13.16□□□□□ -0.3
HOXC11-202ENST00000546378 SLC26A10Q8NG04 563 aa13.16□□□□□ -0.3
HOXC11-202ENST00000546378 BMFQ96LC9 184 aa13.16□□□□□ -0.3
HOXC11-202ENST00000546378 ZNF587Q96SQ5 575 aaPredicted RBP13.16□□□□□ -0.3
HOXC11-202ENST00000546378 EIF5A2Q9GZV4 153 aaKnown RBP13.16□□□□□ -0.3
HOXC11-202ENST00000546378 GAREM1Q9H706 876 aa13.16□□□□□ -0.3
HOXC11-202ENST00000546378 PARPBPQ9NWS1 579 aa13.16□□□□□ -0.3
HOXC11-202ENST00000546378 UPB1Q9UBR1 384 aa13.16□□□□□ -0.3
HOXC11-202ENST00000546378 RCL1Q9Y2P8 373 aaKnown RBP13.16□□□□□ -0.3
HOXC11-202ENST00000546378 TMEM184BQ9Y519 407 aaPredicted RBP13.16□□□□□ -0.3
HOXC11-202ENST00000546378 B3GALT1Q9Y5Z6 326 aa13.16□□□□□ -0.3
HOXC11-202ENST00000546378 ROS1P08922 2347 aa13.16□□□□□ -0.3
HOXC11-202ENST00000546378 ATXN7O15265 892 aaPredicted RBP13.15□□□□□ -0.3
HOXC11-202ENST00000546378 CRTAPO75718 401 aaPredicted RBP13.15□□□□□ -0.3
HOXC11-202ENST00000546378 CT45A8P0DMV1 189 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms