RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 ZBED5Q49AG3 693 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 IFI44LQ53G44 452 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 MESTQ5EB52 335 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 ARL9Q6T311 187 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 ZNF730Q6ZMV8 503 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 TMPRSS11FQ6ZWK6 438 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 MBOAT2Q6ZWT7 520 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 CBLL1Q75N03 491 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 FAM122BQ7Z309 247 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 CPLX4Q7Z7G2 160 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 LRRC28Q86X40 367 aaPredicted RBP7.13□□□□□ -1.27
USP28-215ENST00000545608 BPIFB2Q8N4F0 458 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 ZNF283Q8N7M2 679 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 DEFB108BQ8NET1 73 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 OR2Z1Q8NG97 314 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 ST7LQ8TDW4 575 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 ITLN1Q8WWA0 313 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 ACOT11Q8WXI4 607 aaPredicted RBP7.13□□□□□ -1.27
USP28-215ENST00000545608 LZICQ8WZA0 190 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 SLC7A6Q92536 515 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 PPP1R14AQ96A00 147 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 HAVCR1Q96D42 359 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 SAMD8Q96LT4 415 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 WACQ9BTA9 647 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 PATZ1Q9HBE1 687 aaKnown RBP7.13□□□□□ -1.27
USP28-215ENST00000545608 MRGBPQ9NV56 204 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 ARMCX1Q9P291 453 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 GRHPRQ9UBQ7 328 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 PPIAL4AQ9Y536 164 aa7.13□□□□□ -1.27
USP28-215ENST00000545608 PPIAL4EA0A075B759 164 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 PPIAL4CA0A0B4J2A2 164 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 TEX13CA0A0J9YWL9 993 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 PRSS37A4D1T9 235 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 PPIAL4DF5H284 164 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 NME4O00746 187 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 SGCEO43556 437 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 SLC16A7O60669 478 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 PTP4A3O75365 173 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 ZNF682O95780 498 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 SERPINA1P01009 418 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 DBHP09172 617 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 PPIAL4FP0DN26 164 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 ZNF12P17014 697 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 GSTM3P21266 225 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 TUBG1P23258 451 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 FPR2P25090 351 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 SLC6A9P48067 706 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 UBA52P62987 128 aaKnown RBP7.12□□□□□ -1.27
USP28-215ENST00000545608 ZNF154Q13106 437 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 CCDC92Q53HC0 331 aaPredicted RBP7.12□□□□□ -1.27
USP28-215ENST00000545608 AWAT1Q58HT5 328 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 ZMAT1Q5H9K5 638 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 KLF17Q5JT82 389 aaPredicted RBP7.12□□□□□ -1.27
USP28-215ENST00000545608 C1orf94Q6P1W5 598 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 FKBP9P1Q75LS8 142 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 ZER1Q7Z7L7 766 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 BCL6BQ8N143 479 aaPredicted RBP7.12□□□□□ -1.27
USP28-215ENST00000545608 FAM156AQ8NDB6 213 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 NPEPL1Q8NDH3 523 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 RP9Q8TA86 221 aaKnown RBP7.12□□□□□ -1.27
USP28-215ENST00000545608 PTP4A1Q93096 173 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 RASD2Q96D21 266 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 ZNF570Q96NI8 536 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 SIGLEC11Q96RL6 698 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 C1QTNF5Q9BXJ0 243 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 RERGLQ9H628 205 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 NMNAT1Q9HAN9 279 aaPredicted RBP7.12□□□□□ -1.27
USP28-215ENST00000545608 TUBG2Q9NRH3 451 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 PLEK2Q9NYT0 353 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 ZNF69Q9UC07 566 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 COA3Q9Y2R0 106 aaPredicted RBP7.12□□□□□ -1.27
USP28-215ENST00000545608 AP3M1Q9Y2T2 418 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 DYSFO75923 2080 aa7.12□□□□□ -1.27
USP28-215ENST00000545608 F5H0A9 414 aaPredicted RBP7.11□□□□□ -1.27
USP28-215ENST00000545608 TMEM178BH3BS89 294 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 XKRYO14609 159 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 GSTA4O15217 222 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 RER1O15258 196 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 WIPF1O43516 503 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 AHCYL1O43865 530 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 KHDRBS3O75525 346 aaKnown RBP7.11□□□□□ -1.27
USP28-215ENST00000545608 NDUFB2O95178 105 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 GPANK1O95872 356 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 COX4I1P13073 169 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 NCK1P16333 377 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 TNFRSF1AP19438 455 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 RAB6AP20340 208 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 TNFSF4P23510 183 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 GSK3BP49841 420 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 SLC7A2P52569 658 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 BTG1P62324 171 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 AQP6Q13520 282 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 KRR1Q13601 381 aaKnown RBP7.11□□□□□ -1.27
USP28-215ENST00000545608 HLXQ14774 488 aaPredicted RBP7.11□□□□□ -1.27
USP28-215ENST00000545608 ZMYND11Q15326 602 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 TMEM155Q4W5P6 130 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 ANKRD39Q53RE8 183 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 C8orf82Q6P1X6 216 aaPredicted RBP7.11□□□□□ -1.27
USP28-215ENST00000545608 RRM2BQ7LG56 351 aa7.11□□□□□ -1.27
USP28-215ENST00000545608 ARPINQ7Z6K5 226 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms