RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 SLC36A3Q495N2 470 aa12.58□□□□□ -0.4
USP28-204ENST00000537642 FAM209AQ5JX71 171 aa12.58□□□□□ -0.4
USP28-204ENST00000537642 CFAP77Q6ZQR2 320 aa12.58□□□□□ -0.4
USP28-204ENST00000537642 USP51Q70EK9 711 aa12.58□□□□□ -0.4
USP28-204ENST00000537642 LNX2Q8N448 690 aa12.58□□□□□ -0.4
USP28-204ENST00000537642 SLC37A3Q8NCC5 494 aa12.58□□□□□ -0.4
USP28-204ENST00000537642 ZNRF4Q8WWF5 429 aa12.58□□□□□ -0.4
USP28-204ENST00000537642 CMBLQ96DG6 245 aa12.58□□□□□ -0.4
USP28-204ENST00000537642 C1orf159Q96HA4 380 aa12.58□□□□□ -0.4
USP28-204ENST00000537642 DCLRE1CQ96SD1 692 aaKnown RBP12.58□□□□□ -0.4
USP28-204ENST00000537642 NIPSNAP1Q9BPW8 284 aa12.58□□□□□ -0.4
USP28-204ENST00000537642 HDHD2Q9H0R4 259 aa12.58□□□□□ -0.4
USP28-204ENST00000537642 MSL2Q9HCI7 577 aa12.58□□□□□ -0.4
USP28-204ENST00000537642 TUBG2Q9NRH3 451 aa12.58□□□□□ -0.4
USP28-204ENST00000537642 CYSLTR2Q9NS75 346 aa12.58□□□□□ -0.4
USP28-204ENST00000537642 DECR2Q9NUI1 292 aa12.58□□□□□ -0.4
USP28-204ENST00000537642 ARMC1Q9NVT9 282 aa12.58□□□□□ -0.4
USP28-204ENST00000537642 CYB5R1Q9UHQ9 305 aa12.58□□□□□ -0.4
USP28-204ENST00000537642 PURGQ9UJV8 347 aaKnown RBP12.58□□□□□ -0.4
USP28-204ENST00000537642 KCNS2Q9ULS6 477 aa12.58□□□□□ -0.4
USP28-204ENST00000537642 CACNG2Q9Y698 323 aa12.58□□□□□ -0.4
USP28-204ENST00000537642 TANC2Q9HCD6 1990 aa12.58□□□□□ -0.4
USP28-204ENST00000537642 DNHD1Q96M86 4753 aa12.57□□□□□ -0.4
USP28-204ENST00000537642 IGHV1-69-2A0A0G2JMI3 117 aa12.57□□□□□ -0.4
USP28-204ENST00000537642 TPD52L2O43399 206 aaKnown RBP12.57□□□□□ -0.4
USP28-204ENST00000537642 TIMM8AO60220 97 aaPredicted RBP12.57□□□□□ -0.4
USP28-204ENST00000537642 DNAJC8O75937 253 aaPredicted RBP12.57□□□□□ -0.4
USP28-204ENST00000537642 TGFAP01135 160 aa12.57□□□□□ -0.4
USP28-204ENST00000537642 HLA-DQA2P01906 255 aa12.57□□□□□ -0.4
USP28-204ENST00000537642 ADH4P08319 380 aa12.57□□□□□ -0.4
USP28-204ENST00000537642 KITLGP21583 273 aa12.57□□□□□ -0.4
USP28-204ENST00000537642 LIPAP38571 399 aa12.57□□□□□ -0.4
USP28-204ENST00000537642 GK3PQ14409 553 aa12.57□□□□□ -0.4
USP28-204ENST00000537642 KRTAP27-1Q3LI81 207 aa12.57□□□□□ -0.4
USP28-204ENST00000537642 SPRNQ5BIV9 151 aa12.57□□□□□ -0.4
USP28-204ENST00000537642 CD300LDQ6UXZ3 194 aa12.57□□□□□ -0.4
USP28-204ENST00000537642 TMEM179BQ7Z7N9 219 aa12.57□□□□□ -0.4
USP28-204ENST00000537642 CLDND2Q8NHS1 167 aa12.57□□□□□ -0.4
USP28-204ENST00000537642 GIPC3Q8TF64 312 aa12.57□□□□□ -0.4
USP28-204ENST00000537642 FEVQ99581 238 aa12.57□□□□□ -0.4
USP28-204ENST00000537642 NARFLQ9H6Q4 476 aa12.57□□□□□ -0.4
USP28-204ENST00000537642 SAP30LQ9HAJ7 183 aa12.57□□□□□ -0.4
USP28-204ENST00000537642 CGGBP1Q9UFW8 167 aaPredicted RBP12.57□□□□□ -0.4
USP28-204ENST00000537642 CDC42EP3Q9UKI2 254 aa12.57□□□□□ -0.4
USP28-204ENST00000537642 BAIAP2Q9UQB8 552 aa12.57□□□□□ -0.4
USP28-204ENST00000537642 POMPQ9Y244 141 aa12.57□□□□□ -0.4
USP28-204ENST00000537642 TCRBV3S1A0A5B6 114 aa12.56□□□□□ -0.4
USP28-204ENST00000537642 J3QW42 95 aa12.56□□□□□ -0.4
USP28-204ENST00000537642 PSKH1P11801 424 aa12.56□□□□□ -0.4
USP28-204ENST00000537642 RGS6P49758 472 aa12.56□□□□□ -0.4
USP28-204ENST00000537642 ERFP50548 548 aa12.56□□□□□ -0.4
USP28-204ENST00000537642 CDH15P55291 814 aa12.56□□□□□ -0.4
USP28-204ENST00000537642 CDK5R2Q13319 367 aa12.56□□□□□ -0.4
USP28-204ENST00000537642 CRMP1Q14194 572 aa12.56□□□□□ -0.4
USP28-204ENST00000537642 FLOT2Q14254 428 aa12.56□□□□□ -0.4
USP28-204ENST00000537642 LYPD4Q6UWN0 246 aa12.56□□□□□ -0.4
USP28-204ENST00000537642 Q6ZR03 302 aa12.56□□□□□ -0.4
USP28-204ENST00000537642 SPATA24Q86W54 205 aa12.56□□□□□ -0.4
USP28-204ENST00000537642 LINC01356Q8N9X3 169 aa12.56□□□□□ -0.4
USP28-204ENST00000537642 PROKR2Q8NFJ6 384 aa12.56□□□□□ -0.4
USP28-204ENST00000537642 OR2T33Q8NG76 320 aa12.56□□□□□ -0.4
USP28-204ENST00000537642 OR51L1Q8NGJ5 315 aa12.56□□□□□ -0.4
USP28-204ENST00000537642 OR9Q1Q8NGQ5 310 aa12.56□□□□□ -0.4
USP28-204ENST00000537642 OR2AJ1Q8NGZ0 328 aa12.56□□□□□ -0.4
USP28-204ENST00000537642 OR2T4Q8NH00 348 aa12.56□□□□□ -0.4
USP28-204ENST00000537642 PTP4A1Q93096 173 aa12.56□□□□□ -0.4
USP28-204ENST00000537642 HAVCR1Q96D42 359 aa12.56□□□□□ -0.4
USP28-204ENST00000537642 COG8Q96MW5 612 aa12.56□□□□□ -0.4
USP28-204ENST00000537642 RBM4Q9BWF3 364 aaKnown RBP12.56□□□□□ -0.4
USP28-204ENST00000537642 CDADC1Q9BWV3 514 aa12.56□□□□□ -0.4
USP28-204ENST00000537642 CADM1Q9BY67 442 aaKnown RBP12.56□□□□□ -0.4
USP28-204ENST00000537642 NMNAT2Q9BZQ4 307 aa12.56□□□□□ -0.4
USP28-204ENST00000537642 PNRC2Q9NPJ4 139 aaKnown RBP12.56□□□□□ -0.4
USP28-204ENST00000537642 PTTG3PQ9NZH4 202 aa12.56□□□□□ -0.4
USP28-204ENST00000537642 ZDHHC8Q9ULC8 765 aa12.56□□□□□ -0.4
USP28-204ENST00000537642 ARRDC5A6NEK1 342 aa12.55□□□□□ -0.4
USP28-204ENST00000537642 TVP23AA6NH52 213 aa12.55□□□□□ -0.4
USP28-204ENST00000537642 GSC2O15499 205 aa12.55□□□□□ -0.4
USP28-204ENST00000537642 CD55P08174 381 aa12.55□□□□□ -0.4
USP28-204ENST00000537642 FAM157CP0CG43 387 aa12.55□□□□□ -0.4
USP28-204ENST00000537642 ZNF823P16415 610 aa12.55□□□□□ -0.4
USP28-204ENST00000537642 RPS27P42677 84 aaKnown RBP12.55□□□□□ -0.4
USP28-204ENST00000537642 BNIP1Q12981 228 aa12.55□□□□□ -0.4
USP28-204ENST00000537642 HLXQ14774 488 aaPredicted RBP12.55□□□□□ -0.4
USP28-204ENST00000537642 ZMAT1Q5H9K5 638 aa12.55□□□□□ -0.4
USP28-204ENST00000537642 FAM120AOSQ5T036 256 aa12.55□□□□□ -0.4
USP28-204ENST00000537642 AVPI1Q5T686 147 aa12.55□□□□□ -0.4
USP28-204ENST00000537642 APOBEC3DQ96AK3 386 aaPredicted RBP12.55□□□□□ -0.4
USP28-204ENST00000537642 ELMOD3Q96FG2 381 aa12.55□□□□□ -0.4
USP28-204ENST00000537642 MAP6Q96JE9 813 aa12.55□□□□□ -0.4
USP28-204ENST00000537642 DIRC2Q96SL1 478 aa12.55□□□□□ -0.4
USP28-204ENST00000537642 PITX2Q99697 317 aa12.55□□□□□ -0.4
USP28-204ENST00000537642 ATF6BQ99941 703 aa12.55□□□□□ -0.4
USP28-204ENST00000537642 BEX2Q9BXY8 128 aa12.55□□□□□ -0.4
USP28-204ENST00000537642 EGLN1Q9GZT9 426 aa12.55□□□□□ -0.4
USP28-204ENST00000537642 SHARPINQ9H0F6 387 aa12.55□□□□□ -0.4
USP28-204ENST00000537642 TREM2Q9NZC2 230 aa12.55□□□□□ -0.4
USP28-204ENST00000537642 LPAR3Q9UBY5 353 aa12.55□□□□□ -0.4
USP28-204ENST00000537642 KCNG2Q9UJ96 466 aa12.55□□□□□ -0.4
USP28-204ENST00000537642 DYSFO75923 2080 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms