RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 EEA1Q15075 1411 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 IGLV1-50A0A075B6I6 118 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 TRAV40A0A0B4J280 105 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 TMEM223A0PJW6 202 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 COLCA2A8K830 154 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 RBFOX2O43251 390 aaKnown RBP eCLIP2.1□□□□□ -2.07
CD44-233ENST00000531141 NDUFB10O96000 172 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 FGGP02679 453 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 BCHEP06276 602 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 GNAO1P09471 354 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 SLC2A3P11169 496 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 CASP14P31944 242 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 MAS1LP35410 378 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 CDKN2BP42772 138 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 CSNK1A1P48729 337 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 ZNF138P52744 262 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 MAB21L1Q13394 359 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 DDX39BQ13838 428 aaKnown RBP2.1□□□□□ -2.07
CD44-233ENST00000531141 PRAMEF5Q5TYX0 476 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 PRAMEF6Q5VXH4 476 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 ANKRD22Q5VYY1 191 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 ZNF880Q6PDB4 577 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 NCCRP1Q6ZVX7 275 aaPredicted RBP2.1□□□□□ -2.07
CD44-233ENST00000531141 ASCL5Q7RTU5 278 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 HMGN2P46Q86SG4 172 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 WDR86Q86TI4 376 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 RIMKLAQ8IXN7 391 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 CNPY4Q8N129 248 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 ZNF709Q8N972 641 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 OR2L3Q8NG85 312 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 ZNF461Q8TAF7 563 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 TUBGCP3Q96CW5 907 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 SEH1LQ96EE3 360 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 ILKAPQ9H0C8 392 aaPredicted RBP2.1□□□□□ -2.07
CD44-233ENST00000531141 SYNDIG1Q9H7V2 258 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 LSM7Q9UK45 103 aaKnown RBP2.1□□□□□ -2.07
CD44-233ENST00000531141 MRPS18BQ9Y676 258 aaKnown RBP2.1□□□□□ -2.07
CD44-233ENST00000531141 EYSQ5T1H1 3165 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 ARFGEF1Q9Y6D6 1849 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 ABCC11Q96J66 1382 aa2.1□□□□□ -2.07
CD44-233ENST00000531141 LRRC37A3O60309 1634 aa2.09□□□□□ -2.07
CD44-233ENST00000531141 NHSQ6T4R5 1651 aa2.09□□□□□ -2.07
CD44-233ENST00000531141 ALS2Q96Q42 1657 aa2.09□□□□□ -2.07
CD44-233ENST00000531141 C7orf66A4D0T2 115 aa2.09□□□□□ -2.07
CD44-233ENST00000531141 SPECC1L-ADORA2AF8WAN1 911 aa2.09□□□□□ -2.07
CD44-233ENST00000531141 PPP1R2P9O14990 202 aa2.09□□□□□ -2.07
CD44-233ENST00000531141 RAD51BO15315 384 aa2.09□□□□□ -2.07
CD44-233ENST00000531141 SERPINA3P01011 423 aa2.09□□□□□ -2.07
CD44-233ENST00000531141 ADRA2AP08913 450 aa2.09□□□□□ -2.07
CD44-233ENST00000531141 CT62P0C5K7 136 aa2.09□□□□□ -2.07
CD44-233ENST00000531141 CCNB1P14635 433 aa2.09□□□□□ -2.07
CD44-233ENST00000531141 ZNF43P17038 809 aa2.09□□□□□ -2.07
CD44-233ENST00000531141 GDI1P31150 447 aa2.09□□□□□ -2.07
CD44-233ENST00000531141 ACTG2P63267 376 aa2.09□□□□□ -2.07
CD44-233ENST00000531141 LOXL1Q08397 574 aaPredicted RBP2.09□□□□□ -2.07
CD44-233ENST00000531141 BST1Q10588 318 aa2.09□□□□□ -2.07
CD44-233ENST00000531141 ECH1Q13011 328 aa2.09□□□□□ -2.07
CD44-233ENST00000531141 IRF4Q15306 451 aa2.09□□□□□ -2.07
CD44-233ENST00000531141 SSX2Q16385 188 aa2.09□□□□□ -2.07
CD44-233ENST00000531141 COX19Q49B96 90 aa2.09□□□□□ -2.07
CD44-233ENST00000531141 FAM78AQ5JUQ0 283 aa2.09□□□□□ -2.07
CD44-233ENST00000531141 SPECC1LQ69YQ0 1117 aa2.09□□□□□ -2.07
CD44-233ENST00000531141 ANKRD26P1Q6NSI1 321 aa2.09□□□□□ -2.07
CD44-233ENST00000531141 SHISA6Q6ZSJ9 500 aa2.09□□□□□ -2.07
CD44-233ENST00000531141 FAM43BQ6ZT52 329 aaPredicted RBP2.09□□□□□ -2.07
CD44-233ENST00000531141 BHLHA15Q7RTS1 189 aaPredicted RBP2.09□□□□□ -2.07
CD44-233ENST00000531141 HSD17B11Q8NBQ5 300 aa2.09□□□□□ -2.07
CD44-233ENST00000531141 OR1S2Q8NGQ3 325 aa2.09□□□□□ -2.07
CD44-233ENST00000531141 RGP1Q92546 391 aaPredicted RBP2.09□□□□□ -2.07
CD44-233ENST00000531141 NTAN1Q96AB6 310 aa2.09□□□□□ -2.07
CD44-233ENST00000531141 OR10C1Q96KK4 312 aa2.09□□□□□ -2.07
CD44-233ENST00000531141 ZNF382Q96SR6 550 aa2.09□□□□□ -2.07
CD44-233ENST00000531141 SAV1Q9H4B6 383 aaPredicted RBP2.09□□□□□ -2.07
CD44-233ENST00000531141 UBE2ZQ9H832 354 aaPredicted RBP2.09□□□□□ -2.07
CD44-233ENST00000531141 C12orf10Q9HB07 376 aa2.09□□□□□ -2.07
CD44-233ENST00000531141 PSMC3IPQ9P2W1 217 aaPredicted RBP2.09□□□□□ -2.07
CD44-233ENST00000531141 STARD10Q9Y365 291 aa2.09□□□□□ -2.07
CD44-233ENST00000531141 TMED5Q9Y3A6 229 aa2.09□□□□□ -2.07
CD44-233ENST00000531141 RFNGQ9Y644 331 aa2.09□□□□□ -2.07
CD44-233ENST00000531141 TTC21AQ8NDW8 1320 aa2.09□□□□□ -2.08
CD44-233ENST00000531141 MUC6Q6W4X9 2439 aa2.09□□□□□ -2.08
CD44-233ENST00000531141 TRPM1Q7Z4N2 1603 aa2.09□□□□□ -2.08
CD44-233ENST00000531141 USP47Q96K76 1375 aa2.09□□□□□ -2.08
CD44-233ENST00000531141 CACNA1BQ00975 2339 aa2.08□□□□□ -2.08
CD44-233ENST00000531141 BDP1A6H8Y1 2624 aa2.08□□□□□ -2.08
CD44-233ENST00000531141 NCOR1O75376 2440 aa2.08□□□□□ -2.08
CD44-233ENST00000531141 KIF13BQ9NQT8 1826 aa2.08□□□□□ -2.08
CD44-233ENST00000531141 IGLV2-18A0A075B6J9 118 aa2.08□□□□□ -2.08
CD44-233ENST00000531141 MRPS12O15235 138 aaKnown RBP2.08□□□□□ -2.08
CD44-233ENST00000531141 RBBP9O75884 186 aa2.08□□□□□ -2.08
CD44-233ENST00000531141 IGLV3-19P01714 112 aa2.08□□□□□ -2.08
CD44-233ENST00000531141 TNNI1P19237 187 aa2.08□□□□□ -2.08
CD44-233ENST00000531141 TCN2P20062 427 aa2.08□□□□□ -2.08
CD44-233ENST00000531141 CEACAM6P40199 344 aa2.08□□□□□ -2.08
CD44-233ENST00000531141 AQP2P41181 271 aa2.08□□□□□ -2.08
CD44-233ENST00000531141 CCNHP51946 323 aaPredicted RBP2.08□□□□□ -2.08
CD44-233ENST00000531141 SF3A2Q15428 464 aaKnown RBP2.08□□□□□ -2.08
CD44-233ENST00000531141 ZSCAN26Q16670 478 aa2.08□□□□□ -2.08
CD44-233ENST00000531141 VPS26BQ4G0F5 336 aa2.08□□□□□ -2.08
CD44-233ENST00000531141 CCNJQ5T5M9 372 aa2.08□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms