RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 SNTG1Q9NSN8 517 aa18.62■□□□□ 0.57
VPS28-212ENST00000530836 DDX28Q9NUL7 540 aaKnown RBP18.62■□□□□ 0.57
VPS28-212ENST00000530836 CLEC4AQ9UMR7 237 aa18.62■□□□□ 0.57
VPS28-212ENST00000530836 RELNP78509 3460 aa18.61■□□□□ 0.57
VPS28-212ENST00000530836 A0A075B6Q4 140 aa18.61■□□□□ 0.57
VPS28-212ENST00000530836 TRAV1-2A0A0B4J238 106 aa18.61■□□□□ 0.57
VPS28-212ENST00000530836 TMEM269A0A1B0GVZ9 245 aa18.61■□□□□ 0.57
VPS28-212ENST00000530836 LOC110117498-PIK3R3F6TDL0 507 aa18.61■□□□□ 0.57
VPS28-212ENST00000530836 PRRG2O14669 202 aa18.61■□□□□ 0.57
VPS28-212ENST00000530836 APOC1P02654 83 aa18.61■□□□□ 0.57
VPS28-212ENST00000530836 UCHL1P09936 223 aa18.61■□□□□ 0.57
VPS28-212ENST00000530836 GABRA1P14867 456 aa18.61■□□□□ 0.57
VPS28-212ENST00000530836 PAX7P23759 505 aa18.61■□□□□ 0.57
VPS28-212ENST00000530836 CTSSP25774 331 aa18.61■□□□□ 0.57
VPS28-212ENST00000530836 CALRP27797 417 aaKnown RBP18.61■□□□□ 0.57
VPS28-212ENST00000530836 Q499Y3 187 aa18.61■□□□□ 0.57
VPS28-212ENST00000530836 ZNF704Q6ZNC4 412 aaPredicted RBP18.61■□□□□ 0.57
VPS28-212ENST00000530836 ZNF627Q7L945 461 aa18.61■□□□□ 0.57
VPS28-212ENST00000530836 LINGO2Q7L985 606 aa18.61■□□□□ 0.57
VPS28-212ENST00000530836 SLC22A24Q8N4F4 322 aa18.61■□□□□ 0.57
VPS28-212ENST00000530836 GPR148Q8TDV2 347 aa18.61■□□□□ 0.57
VPS28-212ENST00000530836 ZFAND2BQ8WV99 257 aa18.61■□□□□ 0.57
VPS28-212ENST00000530836 PMF1-BGLAPU3KQ54 211 aa18.61■□□□□ 0.57
VPS28-212ENST00000530836 RER1O15258 196 aa18.6■□□□□ 0.57
VPS28-212ENST00000530836 WNT11O96014 354 aa18.6■□□□□ 0.57
VPS28-212ENST00000530836 PNPP00491 289 aa18.6■□□□□ 0.57
VPS28-212ENST00000530836 RAF1P04049 648 aa18.6■□□□□ 0.57
VPS28-212ENST00000530836 TPOP07202 933 aa18.6■□□□□ 0.57
VPS28-212ENST00000530836 CFL1P23528 166 aaKnown RBP18.6■□□□□ 0.57
VPS28-212ENST00000530836 SCRN3Q0VDG4 424 aa18.6■□□□□ 0.57
VPS28-212ENST00000530836 INSL4Q14641 139 aa18.6■□□□□ 0.57
VPS28-212ENST00000530836 PLXDC2Q6UX71 529 aa18.6■□□□□ 0.57
VPS28-212ENST00000530836 DOLPP1Q86YN1 238 aa18.6■□□□□ 0.57
VPS28-212ENST00000530836 CROCCP3Q8IVE0 287 aa18.6■□□□□ 0.57
VPS28-212ENST00000530836 LRRC18Q8N456 261 aa18.6■□□□□ 0.57
VPS28-212ENST00000530836 AP3S1Q92572 193 aa18.6■□□□□ 0.57
VPS28-212ENST00000530836 PNRC2Q9NPJ4 139 aaKnown RBP18.6■□□□□ 0.57
VPS28-212ENST00000530836 CRNNQ9UBG3 495 aaPredicted RBP18.6■□□□□ 0.57
VPS28-212ENST00000530836 EMC9Q9Y3B6 208 aa18.6■□□□□ 0.57
VPS28-212ENST00000530836 TRBV5-5A0A0J9YX44 114 aa18.6■□□□□ 0.57
VPS28-212ENST00000530836 ACOD1A6NK06 481 aa18.6■□□□□ 0.57
VPS28-212ENST00000530836 ISG15P05161 165 aa18.6■□□□□ 0.57
VPS28-212ENST00000530836 KIR3DL2P43630 455 aa18.6■□□□□ 0.57
VPS28-212ENST00000530836 CASP6P55212 293 aa18.6■□□□□ 0.57
VPS28-212ENST00000530836 ECH1Q13011 328 aa18.6■□□□□ 0.57
VPS28-212ENST00000530836 ACSF3Q4G176 576 aaPredicted RBP18.6■□□□□ 0.57
VPS28-212ENST00000530836 NSUN5P2Q63ZY6 315 aa18.6■□□□□ 0.57
VPS28-212ENST00000530836 NUFIP2Q7Z417 695 aaKnown RBP18.6■□□□□ 0.57
VPS28-212ENST00000530836 CD163Q86VB7 1156 aa18.6■□□□□ 0.57
VPS28-212ENST00000530836 ZGRF1Q86YA3 2104 aa18.6■□□□□ 0.57
VPS28-212ENST00000530836 IL17RDQ8NFM7 739 aa18.6■□□□□ 0.57
VPS28-212ENST00000530836 OR5M9Q8NGP3 310 aa18.6■□□□□ 0.57
VPS28-212ENST00000530836 HDHD2Q9H0R4 259 aa18.6■□□□□ 0.57
VPS28-212ENST00000530836 TPK1Q9H3S4 243 aa18.6■□□□□ 0.57
VPS28-212ENST00000530836 OR52A1Q9UKL2 312 aa18.6■□□□□ 0.57
VPS28-212ENST00000530836 GTF2A1LQ9UNN4 478 aa18.6■□□□□ 0.57
VPS28-212ENST00000530836 TRGV8A0A0C4DH27 118 aa18.59■□□□□ 0.57
VPS28-212ENST00000530836 WDR1O75083 606 aa18.59■□□□□ 0.57
VPS28-212ENST00000530836 UBCP0CG48 685 aaKnown RBP18.59■□□□□ 0.57
VPS28-212ENST00000530836 PEX19P40855 299 aa18.59■□□□□ 0.57
VPS28-212ENST00000530836 CA7P43166 264 aa18.59■□□□□ 0.57
VPS28-212ENST00000530836 OR3A2P47893 321 aa18.59■□□□□ 0.57
VPS28-212ENST00000530836 PSMA6P60900 246 aaKnown RBP18.59■□□□□ 0.57
VPS28-212ENST00000530836 MXD1Q05195 221 aa18.59■□□□□ 0.57
VPS28-212ENST00000530836 HSD17B12Q53GQ0 312 aa18.59■□□□□ 0.57
VPS28-212ENST00000530836 ELFN2Q5R3F8 820 aa18.59■□□□□ 0.57
VPS28-212ENST00000530836 FAM214BQ7L5A3 538 aa18.59■□□□□ 0.57
VPS28-212ENST00000530836 OR14A2Q96R54 314 aa18.59■□□□□ 0.57
VPS28-212ENST00000530836 KCNJ15Q99712 375 aa18.59■□□□□ 0.57
VPS28-212ENST00000530836 ATF6BQ99941 703 aa18.59■□□□□ 0.57
VPS28-212ENST00000530836 FAM206AQ9NX38 181 aa18.59■□□□□ 0.57
VPS28-212ENST00000530836 MALT1Q9UDY8 824 aa18.59■□□□□ 0.57
VPS28-212ENST00000530836 TINAGQ9UJW2 476 aa18.59■□□□□ 0.57
VPS28-212ENST00000530836 FBXL3Q9UKT7 428 aa18.59■□□□□ 0.57
VPS28-212ENST00000530836 TIMM10BQ9Y5J6 103 aa18.59■□□□□ 0.57
VPS28-212ENST00000530836 PEX16Q9Y5Y5 336 aa18.59■□□□□ 0.57
VPS28-212ENST00000530836 MYO18BQ8IUG5 2567 aa18.58■□□□□ 0.57
VPS28-212ENST00000530836 ESPL1Q14674 2120 aa18.58■□□□□ 0.57
VPS28-212ENST00000530836 IQCMA0A1B0GVH7 501 aa18.58■□□□□ 0.56
VPS28-212ENST00000530836 CNOT4O95628 575 aaKnown RBP18.58■□□□□ 0.56
VPS28-212ENST00000530836 HOXD4P09016 255 aaPredicted RBP18.58■□□□□ 0.56
VPS28-212ENST00000530836 OCM2P0CE71 109 aa18.58■□□□□ 0.56
VPS28-212ENST00000530836 B4GALT1P15291 398 aa18.58■□□□□ 0.56
VPS28-212ENST00000530836 S100A5P33763 92 aa18.58■□□□□ 0.56
VPS28-212ENST00000530836 MFGE8Q08431 387 aaPredicted RBP18.58■□□□□ 0.56
VPS28-212ENST00000530836 BCL2L15Q5TBC7 163 aa18.58■□□□□ 0.56
VPS28-212ENST00000530836 TMEM244Q5VVB8 128 aa18.58■□□□□ 0.56
VPS28-212ENST00000530836 FBXW9Q5XUX1 488 aa18.58■□□□□ 0.56
VPS28-212ENST00000530836 ZNF813Q6ZN06 617 aa18.58■□□□□ 0.56
VPS28-212ENST00000530836 SLC16A14Q7RTX9 510 aa18.58■□□□□ 0.56
VPS28-212ENST00000530836 UBE2J2Q8N2K1 259 aa18.58■□□□□ 0.56
VPS28-212ENST00000530836 OR6Q1Q8NGQ2 317 aa18.58■□□□□ 0.56
VPS28-212ENST00000530836 OR13C5Q8NGS8 318 aa18.58■□□□□ 0.56
VPS28-212ENST00000530836 S100ZQ8WXG8 99 aa18.58■□□□□ 0.56
VPS28-212ENST00000530836 RGP1Q92546 391 aaPredicted RBP18.58■□□□□ 0.56
VPS28-212ENST00000530836 HTRA1Q92743 480 aa18.58■□□□□ 0.56
VPS28-212ENST00000530836 G6PC2Q9NQR9 355 aa18.58■□□□□ 0.56
VPS28-212ENST00000530836 UBR5O95071 2799 aaPredicted RBP18.58■□□□□ 0.56
VPS28-212ENST00000530836 FIGNL2A6NMB9 653 aa18.57■□□□□ 0.56
VPS28-212ENST00000530836 HNRNPA0Q13151 305 aaKnown RBP18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms