RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 C13orf42A0A1B0GVH6 325 aa12.76□□□□□ -0.37
USP48-213ENST00000529637 C11orf98E9PRG8 122 aa12.76□□□□□ -0.37
USP48-213ENST00000529637 ZNF208O43345 1280 aa12.76□□□□□ -0.37
USP48-213ENST00000529637 HEXAP06865 529 aa12.76□□□□□ -0.37
USP48-213ENST00000529637 ABCD3P28288 659 aa12.76□□□□□ -0.37
USP48-213ENST00000529637 CCKBRP32239 447 aa12.76□□□□□ -0.37
USP48-213ENST00000529637 RAB5BP61020 215 aa12.76□□□□□ -0.37
USP48-213ENST00000529637 SRSF4Q08170 494 aaKnown RBP12.76□□□□□ -0.37
USP48-213ENST00000529637 DMWDQ09019 674 aa12.76□□□□□ -0.37
USP48-213ENST00000529637 FABP9Q0Z7S8 132 aa12.76□□□□□ -0.37
USP48-213ENST00000529637 CD226Q15762 336 aa12.76□□□□□ -0.37
USP48-213ENST00000529637 ACER2Q5QJU3 275 aa12.76□□□□□ -0.37
USP48-213ENST00000529637 PGAP1Q75T13 922 aa12.76□□□□□ -0.37
USP48-213ENST00000529637 ZNF595Q8IYB9 648 aa12.76□□□□□ -0.37
USP48-213ENST00000529637 ADOQ96SZ5 270 aa12.76□□□□□ -0.37
USP48-213ENST00000529637 NRSN2Q9GZP1 204 aa12.76□□□□□ -0.37
USP48-213ENST00000529637 WDR76Q9H967 626 aa12.76□□□□□ -0.37
USP48-213ENST00000529637 TMEM100Q9NV29 134 aa12.76□□□□□ -0.37
USP48-213ENST00000529637 GRHPRQ9UBQ7 328 aa12.76□□□□□ -0.37
USP48-213ENST00000529637 UPB1Q9UBR1 384 aa12.76□□□□□ -0.37
USP48-213ENST00000529637 PRPS1P60891 318 aa12.75□□□□□ -0.37
USP48-213ENST00000529637 CORO6Q6QEF8 472 aa12.75□□□□□ -0.37
USP48-213ENST00000529637 CYTL1Q9NRR1 136 aa12.75□□□□□ -0.37
USP48-213ENST00000529637 CSAG2Q9Y5P2 127 aa12.75□□□□□ -0.37
USP48-213ENST00000529637 A0A1W2PPC1 479 aa12.75□□□□□ -0.37
USP48-213ENST00000529637 DOK2O60496 412 aa12.75□□□□□ -0.37
USP48-213ENST00000529637 SRPX2O60687 465 aaPredicted RBP12.75□□□□□ -0.37
USP48-213ENST00000529637 IGHV2-70P01814 119 aa12.75□□□□□ -0.37
USP48-213ENST00000529637 MELTFP08582 738 aa12.75□□□□□ -0.37
USP48-213ENST00000529637 APEHP13798 732 aaKnown RBP12.75□□□□□ -0.37
USP48-213ENST00000529637 ADH6P28332 368 aa12.75□□□□□ -0.37
USP48-213ENST00000529637 GPR3P46089 330 aa12.75□□□□□ -0.37
USP48-213ENST00000529637 OR1D4P47884 311 aa12.75□□□□□ -0.37
USP48-213ENST00000529637 DPY19L4Q7Z388 723 aa12.75□□□□□ -0.37
USP48-213ENST00000529637 BAP18Q8IXM2 172 aa12.75□□□□□ -0.37
USP48-213ENST00000529637 ZNF321PQ8N8H1 164 aa12.75□□□□□ -0.37
USP48-213ENST00000529637 FAM174AQ8TBP5 190 aa12.75□□□□□ -0.37
USP48-213ENST00000529637 LMX1AQ8TE12 382 aa12.75□□□□□ -0.37
USP48-213ENST00000529637 SLC25A36Q96CQ1 311 aa12.75□□□□□ -0.37
USP48-213ENST00000529637 SLC25A21Q9BQT8 299 aaPredicted RBP12.75□□□□□ -0.37
USP48-213ENST00000529637 RHOFQ9HBH0 211 aa12.75□□□□□ -0.37
USP48-213ENST00000529637 LAMP5Q9UJQ1 280 aa12.75□□□□□ -0.37
USP48-213ENST00000529637 KLK13Q9UKR3 277 aa12.75□□□□□ -0.37
USP48-213ENST00000529637 PCDHGA1Q9Y5H4 931 aa12.75□□□□□ -0.37
USP48-213ENST00000529637 LAMA1P25391 3075 aa12.75□□□□□ -0.37
USP48-213ENST00000529637 MSGN1A6NI15 193 aa12.75□□□□□ -0.37
USP48-213ENST00000529637 UBE2CO00762 179 aa12.75□□□□□ -0.37
USP48-213ENST00000529637 PLGP00747 810 aaPredicted RBP12.75□□□□□ -0.37
USP48-213ENST00000529637 ZBTB25P24278 435 aa12.75□□□□□ -0.37
USP48-213ENST00000529637 ID4P47928 161 aa12.75□□□□□ -0.37
USP48-213ENST00000529637 BLKP51451 505 aa12.75□□□□□ -0.37
USP48-213ENST00000529637 GFERP55789 205 aa12.75□□□□□ -0.37
USP48-213ENST00000529637 AIMP2Q13155 320 aaKnown RBP12.75□□□□□ -0.37
USP48-213ENST00000529637 ADAD2Q8NCV1 583 aaKnown RBP12.75□□□□□ -0.37
USP48-213ENST00000529637 TMEM235A6NFC5 223 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 ZNF736B4DX44 427 aaPredicted RBP12.74□□□□□ -0.37
USP48-213ENST00000529637 HCRTR2O43614 444 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 S100A6P06703 90 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 TACSTD2P09758 323 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 VAMP1P23763 118 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 KIR3DL2P43630 455 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 TTLL10Q6ZVT0 673 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 OR4K17Q8NGC6 315 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 ZNF417Q8TAU3 575 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 RNF141Q8WVD5 230 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 TSEN15Q8WW01 171 aaKnown RBP12.74□□□□□ -0.37
USP48-213ENST00000529637 DCUN1D4Q92564 292 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 EDAQ92838 391 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 MCHR2Q969V1 340 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 ISOC2Q96AB3 205 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 EDEM2Q9BV94 578 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 LRRC61Q9BV99 259 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 OR51M1Q9H341 326 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 SEBOXQ9HB31 216 aaPredicted RBP12.74□□□□□ -0.37
USP48-213ENST00000529637 OR2S2Q9NQN1 319 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 CGGBP1Q9UFW8 167 aaPredicted RBP12.74□□□□□ -0.37
USP48-213ENST00000529637 SLC22A13Q9Y226 551 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 PMS2P1A4D2B8 440 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 H0YIZ8 118 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 CD14P08571 375 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 SFTA3P0C7M3 94 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 CD1CP29017 333 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 ACTBP60709 375 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 ACTG1P63261 375 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 PJVKQ0ZLH3 352 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 EIF2B1Q14232 305 aaKnown RBP12.74□□□□□ -0.37
USP48-213ENST00000529637 PRTGQ2VWP7 1150 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 KIAA0895LQ68EN5 471 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 WBP2NLQ6ICG8 309 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 OR52W1Q6IF63 320 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 LINC00114Q6XXX2 140 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 GVQW1Q8N7I0 195 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 TMEM229BQ8NBD8 167 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 NXF5Q9H1B4 397 aaKnown RBP12.74□□□□□ -0.37
USP48-213ENST00000529637 MMP26Q9NRE1 261 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 PRODH2Q9UF12 536 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 MMP17Q9ULZ9 603 aa12.74□□□□□ -0.37
USP48-213ENST00000529637 NUP210LQ5VU65 1888 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 LOC100289279A0A1B0GTE1 492 aa12.73□□□□□ -0.37
USP48-213ENST00000529637 C17orf51A8MQB3 221 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms