RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 CSAG2Q9Y5P2 127 aa11.49□□□□□ -0.57
USP53-209ENST00000514665 RIF1Q5UIP0 2472 aaKnown RBP11.48□□□□□ -0.57
USP53-209ENST00000514665 SDK2Q58EX2 2172 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 SHISA8B8ZZ34 492 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 OR2J2O76002 312 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 CER1O95813 267 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 GNB3P16520 340 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 EGR3Q06889 387 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 SOHLH1Q5JUK2 328 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 C17orf107Q6ZR85 190 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 HAS2Q92819 552 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 WDFY2Q96P53 400 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 UTP23Q9BRU9 249 aaKnown RBP11.48□□□□□ -0.57
USP53-209ENST00000514665 B3GALT5Q9Y2C3 310 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 FOCADQ5VW36 1801 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 TRAV1-2A0A0B4J238 106 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 TMEM200CA6NKL6 621 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 RGS11O94810 467 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 CT62P0C5K7 136 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 OR4E1P0C645 316 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 ZNF74Q16587 644 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 BPHLQ86WA6 291 aaPredicted RBP11.48□□□□□ -0.57
USP53-209ENST00000514665 ETFBKMTQ8IXQ9 262 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 NUDT9Q9BW91 350 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 SH3BGRL2Q9UJC5 107 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 A0A1B0GUH1 482 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 WNT1P04628 370 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 CNR1P21554 472 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 CHATP28329 748 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 HRH1P35367 487 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 CCR5P51681 352 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 GRB2P62993 217 aaKnown RBP11.48□□□□□ -0.57
USP53-209ENST00000514665 SNTB1Q13884 538 aaKnown RBP11.48□□□□□ -0.57
USP53-209ENST00000514665 SFRP5Q5T4F7 317 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 CBLN3Q6UW01 205 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 DOK3Q7L591 496 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 KCNRGQ8N5I3 272 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 PLPP5Q8NEB5 264 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 OR4S1Q8NGB4 309 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 CPNE4Q96A23 557 aaPredicted RBP11.48□□□□□ -0.57
USP53-209ENST00000514665 RBMXL1Q96E39 390 aaKnown RBP11.48□□□□□ -0.57
USP53-209ENST00000514665 LRRC46Q96FV0 321 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 OCSTAMPQ9BR26 566 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 FAM60AQ9NP50 221 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 MMP25Q9NPA2 562 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 ATPIF1Q9UII2 106 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 FBXO7Q9Y3I1 522 aa11.48□□□□□ -0.57
USP53-209ENST00000514665 IFNA4P05014 189 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 MSR1P21757 451 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 MMP15P51511 669 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 PNLIPRP2P54317 469 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 UBE2KP61086 200 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 IFITM3Q01628 133 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 MESP2Q0VG99 397 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 SRSF5Q13243 272 aaKnown RBP11.47□□□□□ -0.57
USP53-209ENST00000514665 CAMK2BQ13554 666 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 VHLLQ6RSH7 139 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 KIAA1958Q8N8K9 716 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 COX14Q96I36 57 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 LRRC61Q9BV99 259 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 TMEM231Q9H6L2 316 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 MYOFQ9NZM1 2061 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 PLSCR5A0PG75 271 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 FAM166BA8MTA8 275 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 LGALS8O00214 317 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 LAP3P28838 519 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 C16orf47Q6ZP98 133 aaPredicted RBP11.47□□□□□ -0.57
USP53-209ENST00000514665 TMEM200AQ86VY9 491 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 TCTE3Q8IZS6 198 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 SEMA6DQ8NFY4 1073 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 ZCCHC4Q9H5U6 513 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 CACNA1GO43497 2377 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 COL5A3P25940 1745 aaPredicted RBP11.47□□□□□ -0.57
USP53-209ENST00000514665 IGHV3-15A0A0B4J1V0 119 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 OTOL1A6NHN0 477 aaPredicted RBP11.47□□□□□ -0.57
USP53-209ENST00000514665 OR6C65A6NJZ3 312 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 M0R135 149 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 PLPP2O43688 288 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 GABRA2P47869 451 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 LPCAT3Q6P1A2 487 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 FAM122BQ7Z309 247 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 WDR5BQ86VZ2 330 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 DND1Q8IYX4 353 aaKnown RBP11.47□□□□□ -0.57
USP53-209ENST00000514665 ZNF799Q96GE5 643 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 ZNF416Q9BWM5 594 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 SLC23A1Q9UHI7 598 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 KIF25Q9UIL4 384 aa11.47□□□□□ -0.57
USP53-209ENST00000514665 SERPINA7P05543 415 aa11.46□□□□□ -0.57
USP53-209ENST00000514665 POU3F3P20264 500 aaPredicted RBP11.46□□□□□ -0.57
USP53-209ENST00000514665 PSMB6P28072 239 aa11.46□□□□□ -0.57
USP53-209ENST00000514665 GZMMP51124 257 aa11.46□□□□□ -0.57
USP53-209ENST00000514665 FOXF1Q12946 379 aa11.46□□□□□ -0.57
USP53-209ENST00000514665 NLRC3Q7RTR2 1065 aa11.46□□□□□ -0.57
USP53-209ENST00000514665 UBE3DQ7Z6J8 389 aa11.46□□□□□ -0.57
USP53-209ENST00000514665 OR51H1Q8NH63 302 aa11.46□□□□□ -0.57
USP53-209ENST00000514665 UPRTQ96BW1 309 aa11.46□□□□□ -0.57
USP53-209ENST00000514665 MVB12AQ96EY5 273 aa11.46□□□□□ -0.57
USP53-209ENST00000514665 C20orf24Q9BUV8 137 aa11.46□□□□□ -0.57
USP53-209ENST00000514665 A0A1W2PPV4 95 aa11.46□□□□□ -0.57
USP53-209ENST00000514665 CELA2BP08218 269 aaPredicted RBP11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms