RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 ADAT1Q9BUB4 502 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 NKX2-4Q9H2Z4 354 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 ASF1BQ9NVP2 202 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 MBD2Q9UBB5 411 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 IGHV3-20A0A0C4DH32 117 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 FRG2CA6NGY1 282 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 OR2AT4A6NND4 320 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 DISC1C4P0D8 188 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 RAB27BO00194 218 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 SULT1C2O00338 296 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 GNB3P16520 340 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 IL32P24001 234 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 RIPPLY1Q0D2K3 151 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 EBPQ15125 230 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 RNF144BQ7Z419 303 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 WDFY1Q8IWB7 410 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 ZNF248Q8NDW4 579 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 ZNF721Q8TF20 911 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 ARL5BQ96KC2 179 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 TPSD1Q9BZJ3 242 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 SAV1Q9H4B6 383 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 PTGES2Q9H7Z7 377 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 SCPEP1Q9HB40 452 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 PCDHB16Q9NRJ7 776 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 CUTCQ9NTM9 273 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 CD207Q9UJ71 328 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 GDF2Q9UK05 429 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 PCDH15Q96QU1 1955 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 A0A1B0GW55 424 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 MEGF11A6BM72 1044 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 OR14I1A6ND48 311 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 METTL21EPA6NDL7 271 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 PLPP3O14495 311 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 STK17BO94768 372 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 IGKV3-11P04433 115 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 DUX4L2P0CJ85 424 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 DUX4L3P0CJ86 424 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 DUX4L4P0CJ87 422 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 DUX4L5P0CJ88 424 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 DUX4L6P0CJ89 424 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 DUX4L7P0CJ90 424 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 PRKACAP17612 351 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 IGFBP3P17936 291 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 MRPS21P82921 87 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 FGL1Q08830 312 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 SNTB1Q13884 538 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 ZNF169Q14929 603 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 SHHQ15465 462 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 EIF4E3Q8N5X7 224 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 THAP6Q8TBB0 222 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 ADAMTS18Q8TE60 1221 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 MESP1Q9BRJ9 268 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 PELOQ9BRX2 385 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 DUX4Q9UBX2 424 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 PCDHB10Q9UN67 800 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 R4GMQ9 66 aa8.28□□□□□ -1.08
LIMCH1-215ENST00000512632 A0A1B0GTI1 187 aa8.27□□□□□ -1.08
LIMCH1-215ENST00000512632 A8MVM7 634 aa8.27□□□□□ -1.08
LIMCH1-215ENST00000512632 GP1BAP07359 652 aa8.27□□□□□ -1.08
LIMCH1-215ENST00000512632 DRD1P21728 446 aa8.27□□□□□ -1.08
LIMCH1-215ENST00000512632 HRH1P35367 487 aa8.27□□□□□ -1.08
LIMCH1-215ENST00000512632 GABRA4P48169 554 aa8.27□□□□□ -1.08
LIMCH1-215ENST00000512632 DEFB133Q30KQ1 61 aa8.27□□□□□ -1.08
LIMCH1-215ENST00000512632 PDSS1Q5T2R2 415 aa8.27□□□□□ -1.08
LIMCH1-215ENST00000512632 MOB3CQ70IA8 216 aa8.27□□□□□ -1.08
LIMCH1-215ENST00000512632 OR13C9Q8NGT0 318 aa8.27□□□□□ -1.08
LIMCH1-215ENST00000512632 NUDT22Q9BRQ3 303 aa8.27□□□□□ -1.08
LIMCH1-215ENST00000512632 FOXQ1Q9C009 403 aa8.27□□□□□ -1.08
LIMCH1-215ENST00000512632 SLC39A1Q9NY26 324 aa8.27□□□□□ -1.08
LIMCH1-215ENST00000512632 PRR13Q9NZ81 148 aa8.27□□□□□ -1.08
LIMCH1-215ENST00000512632 GPR31O00270 319 aa8.27□□□□□ -1.09
LIMCH1-215ENST00000512632 BCL2L11O43521 198 aa8.27□□□□□ -1.09
LIMCH1-215ENST00000512632 FADS1O60427 444 aa8.27□□□□□ -1.09
LIMCH1-215ENST00000512632 DXOO77932 396 aaKnown RBP8.27□□□□□ -1.09
LIMCH1-215ENST00000512632 CD8AP01732 235 aa8.27□□□□□ -1.09
LIMCH1-215ENST00000512632 PMP2P02689 132 aa8.27□□□□□ -1.09
LIMCH1-215ENST00000512632 IFNA6P05013 189 aa8.27□□□□□ -1.09
LIMCH1-215ENST00000512632 H2BFMP0C1H6 154 aa8.27□□□□□ -1.09
LIMCH1-215ENST00000512632 PI3P19957 117 aa8.27□□□□□ -1.09
LIMCH1-215ENST00000512632 ZBTB25P24278 435 aa8.27□□□□□ -1.09
LIMCH1-215ENST00000512632 BDKRB2P30411 391 aa8.27□□□□□ -1.09
LIMCH1-215ENST00000512632 SSBP1Q04837 148 aaKnown RBP8.27□□□□□ -1.09
LIMCH1-215ENST00000512632 KIAA0895LQ68EN5 471 aa8.27□□□□□ -1.09
LIMCH1-215ENST00000512632 ACOT7LQ6ZUV0 252 aa8.27□□□□□ -1.09
LIMCH1-215ENST00000512632 COX15Q7KZN9 410 aa8.27□□□□□ -1.09
LIMCH1-215ENST00000512632 INO80EQ8NBZ0 244 aaPredicted RBP8.27□□□□□ -1.09
LIMCH1-215ENST00000512632 OR2I1PQ8NGU4 316 aa8.27□□□□□ -1.09
LIMCH1-215ENST00000512632 ZNF416Q9BWM5 594 aa8.27□□□□□ -1.09
LIMCH1-215ENST00000512632 VDAC3Q9Y277 283 aa8.27□□□□□ -1.09
LIMCH1-215ENST00000512632 C9orf170A2RU37 121 aa8.27□□□□□ -1.09
LIMCH1-215ENST00000512632 HSPB2A8KAH6 182 aa8.27□□□□□ -1.09
LIMCH1-215ENST00000512632 SHISA8B8ZZ34 492 aa8.27□□□□□ -1.09
LIMCH1-215ENST00000512632 OR2F2O95006 317 aa8.27□□□□□ -1.09
LIMCH1-215ENST00000512632 ABCD3P28288 659 aa8.27□□□□□ -1.09
LIMCH1-215ENST00000512632 BLKP51451 505 aa8.27□□□□□ -1.09
LIMCH1-215ENST00000512632 OR2F1Q13607 317 aa8.27□□□□□ -1.09
LIMCH1-215ENST00000512632 HSPB2Q16082 182 aa8.27□□□□□ -1.09
LIMCH1-215ENST00000512632 PAQR4Q8N4S7 273 aaPredicted RBP8.27□□□□□ -1.09
LIMCH1-215ENST00000512632 MRGPRFQ96AM1 343 aa8.27□□□□□ -1.09
LIMCH1-215ENST00000512632 TSNAXQ99598 290 aaKnown RBP8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms