RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 IFNA14P01570 189 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 ETFAP13804 333 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 COX5AP20674 150 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 TACR3P29371 465 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 CALCRP30988 508 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 FGF9P31371 208 aaPredicted RBP7.06□□□□□ -1.28
SCN1A-207ENST00000507401 NUP62P37198 522 aaPredicted RBP7.06□□□□□ -1.28
SCN1A-207ENST00000507401 ACAA2P42765 397 aaKnown RBP7.06□□□□□ -1.28
SCN1A-207ENST00000507401 CRATP43155 626 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 ZNF79Q15937 498 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 KRTAP21-3Q3LHN1 58 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 IQCCQ4KMZ1 466 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 PYDC2Q56P42 97 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 TIMM23BQ5SRD1 257 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 SLC25A30Q5SVS4 291 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 NCMAPQ5T1S8 102 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 MRPL2Q5T653 305 aaKnown RBP7.06□□□□□ -1.28
SCN1A-207ENST00000507401 FBXW9Q5XUX1 488 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 ABLIM2Q6H8Q1 611 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 WBP2NLQ6ICG8 309 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 KLHL17Q6TDP4 642 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 BHLHA15Q7RTS1 189 aaPredicted RBP7.06□□□□□ -1.28
SCN1A-207ENST00000507401 ZNF100Q8IYN0 542 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 APH1BQ8WW43 257 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 MUCL1Q96DR8 90 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 DIRAS2Q96HU8 199 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 FAM46AQ96IP4 442 aaKnown RBP7.06□□□□□ -1.28
SCN1A-207ENST00000507401 ARL5BQ96KC2 179 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 KCTD7Q96MP8 289 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 NEDD4LQ96PU5 975 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 CCL19Q99731 98 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 CENPOQ9BU64 300 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 ZNF436Q9C0F3 470 aaPredicted RBP7.06□□□□□ -1.28
SCN1A-207ENST00000507401 SHARPINQ9H0F6 387 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 DNTTIP1Q9H147 329 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 OR51E2Q9H255 320 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 UBTD1Q9HAC8 227 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 ZNF701Q9NV72 531 aaPredicted RBP7.06□□□□□ -1.28
SCN1A-207ENST00000507401 VAPAQ9P0L0 249 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 PFDN2Q9UHV9 154 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 SCP2D1Q9UJQ7 156 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 RPL36Q9Y3U8 105 aaKnown RBP7.06□□□□□ -1.28
SCN1A-207ENST00000507401 V9GYQ6 96 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 ROS1P08922 2347 aa7.06□□□□□ -1.28
SCN1A-207ENST00000507401 SCO2A0A1W2PP80 73 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 hCG_1807616A0A1W2PRN6 198 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 A8MVM7 634 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 FAM171A2A8MVW0 826 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 CLIC1O00299 241 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 AP3D1O14617 1153 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 HS3ST1O14792 307 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 TSPAN4O14817 238 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 MRPL33O75394 65 aaKnown RBP7.05□□□□□ -1.28
SCN1A-207ENST00000507401 CCNB2O95067 398 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 VAMP5O95183 116 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 ECDO95905 644 aaPredicted RBP7.05□□□□□ -1.28
SCN1A-207ENST00000507401 CD3EP07766 207 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 NAT2P11245 290 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 GABRB1P18505 474 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 FSTP19883 344 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 CXCR1P25024 350 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 KDELR2P33947 212 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 CAPZA2P47755 286 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 GZMMP51124 257 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 RBBP4Q09028 425 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 ZNF273Q14593 569 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 RGNQ15493 299 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 VMACQ2NL98 169 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 ELP2Q6IA86 826 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 OR7E24Q6IFN5 339 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 PAQR6Q6TCH4 344 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 BAIAP2L2Q6UXY1 529 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 HSD17B13Q7Z5P4 300 aaPredicted RBP7.05□□□□□ -1.28
SCN1A-207ENST00000507401 TMEM179BQ7Z7N9 219 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 Q8N402 240 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 LINC00471Q8N535 108 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 ZNF433Q8N7K0 673 aaPredicted RBP7.05□□□□□ -1.28
SCN1A-207ENST00000507401 UXS1Q8NBZ7 420 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 SLC37A3Q8NCC5 494 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 OR4M1Q8NGD0 313 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 TMEM171Q8WVE6 324 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 APH1AQ96BI3 265 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 TMEM43Q9BTV4 400 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 SF3B5Q9BWJ5 86 aaKnown RBP7.05□□□□□ -1.28
SCN1A-207ENST00000507401 SLC19A3Q9BZV2 496 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 OR11A1Q9GZK7 315 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 A4GALTQ9NPC4 353 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 RLIMQ9NVW2 624 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 MALT1Q9UDY8 824 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 PRSS50Q9UI38 385 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 RNF115Q9Y4L5 304 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 NUBP2Q9Y5Y2 271 aa7.05□□□□□ -1.28
SCN1A-207ENST00000507401 PRR14LQ5THK1 2151 aa7.04□□□□□ -1.28
SCN1A-207ENST00000507401 A0A1W2PPL8 197 aa7.04□□□□□ -1.28
SCN1A-207ENST00000507401 RPS10-NUDT3A0A1W2PQS6 291 aa7.04□□□□□ -1.28
SCN1A-207ENST00000507401 TMEM72A0PK05 275 aa7.04□□□□□ -1.28
SCN1A-207ENST00000507401 DPRXA6NFQ7 191 aa7.04□□□□□ -1.28
SCN1A-207ENST00000507401 LIPT2A6NK58 231 aa7.04□□□□□ -1.28
SCN1A-207ENST00000507401 OR5H1A6NKK0 313 aa7.04□□□□□ -1.28
SCN1A-207ENST00000507401 MPTX1A8MV57 137 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 189.1 ms